barSeed - Barley Seed Development Database

Probe CUST_274_PI415269222

Source Contig TA28850_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_274_PI415269222	Hv_44K_v2	ACATATTCTCGTTTATGCAGAGACGACTGCAAAAATATATGTCGCCTACGCACCGTCCAT	830	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75969.1	1132	2e-24	145 - 204	100	60 / 60	minus	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
MLOC	AK370783	1237	2e-23	1180 - 1237	100	58 / 58	plus	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
JLOC1	JLOC1_50675.1	929	8e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC03578	742	3e-25	607 - 666	100	60 / 60	plus	ABC03578
Harvest21	ABC03575	1168	1e-23	1112 - 1168	100	57 / 57	plus
Harvest35	U35_712	584	3e-25	407 - 466	100	60 / 60	plus

Contig Sequence (890 bp)

>TA28850_4513 890 Hv_44K_v2
GCACGAGGCGGCCTTCGGTACCACGGGGGACTTGGACACCCGGAAGCGAGAGGTGGCCGC
CTTCTTCGGCCAGACTTCCCACGAGACCACCGGCGGCTGGCCTACCGCGCCCGACGGCCC
CTTCTCGTGGGGCTACTGCTTCAAGCAGGAGCGGGGCTCGCCGCCGAGCTACTGCGACCA
GAGCGCCGACTGGCCGTGCGCGCCCGGCAAGCAGTACTATGGCCGCGGCCCCATCCAGCT
CACCCACAACTACAACTACGGACCGGCGGGGCGGGCGATCGGGGTGGACCTGCTGAACAA
CCCGGACCTGGTGGCGTCGGACCCGACGGTGGCGTTCAAGACGGCGATTTGGTTCTGGAT
GACGACGCAGTCCAACAAGCCGTCGTGCCACGACGTGATCACGGGGTTGTGGAGGCCGAC
GGCCAGGGACAGCGCGGCCGGACGGGTACCCGGATACGGCGTGATCACCAACGTCATCAA
TGGCGGGATCGAATGCGGCAAGGGGCAGAACGACAAGGTGGCCGACCGGATCGGGTTCTA
CAAGCGCTACTGTGACATCTTCGGCATCGGCTACGGGAATAACCTCGACTGCTACAACCA
ATTGTCGTTCAACATCGGGCTCGCGGTGCAGTGAGATCATAAGATTGGGTCCTCGGTTTA
TGCATGTGCGTGTGTGGATGTGATGATCACCCACAAATAAATAATCTTGGTAAGTATTTT
ATGACCAAATAAATGGATGTCCAGACCTTCCAGACATCTGTAATGGAGTATATAGTACAT
GTATGTCGATGCACGGACAGGAAAGGAAGTGTCGCCACCTTTTATTATAAACATATTCTC
GTTTATGCAGAGACGACTGCAAAAATATATGTCGCCTACGCACCGTCCAT

Homology of Contig TA28850_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33130.1	341	2e-119	protein\|CHIT17 - Chitinase family protein precursor, expressed
Brachypodium v1_2	Bradi1g29887.1	321	7e-119
Arabidopsis v10	AT3G12500.1	335	2e-114	\| Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB \| basic chitinase \| chr3:3962501-3963984 REVERSE LENGTH=335