barSeed - Barley Seed Development Database

Probe CUST_2744_PI390587928

Source Contig U35_9181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2744_PI390587928	Hv_44K_v2	GCACTGTTAGATAATGATGAAACATAGCAGCGTAGTCTAATTTCGACTACTTGGATCGAA	589	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67858.2	5289	2e-24	2311 - 2370	100	60 / 60	minus	ABC16611 ABC18956
MLOC	MLOC_67858.1	4868	2e-24	1647 - 1706	100	60 / 60	minus	ABC16611 ABC18956
JLOC1	JLOC1_44846.3	3836	8e-25	2738 - 2797	100	60 / 60	plus
JLOC1	JLOC1_44846.2	4001	8e-25	2903 - 2962	100	60 / 60	plus
JLOC1	JLOC1_44846.1	4151	8e-25	3053 - 3112	100	60 / 60	plus
JLOC1	JLOC1_44845.1	2388	8e-25	1669 - 1728	100	60 / 60	minus
Harvest21	ABC18956	664	3e-25	16 - 75	100	60 / 60	minus	ABC18956
Harvest35	U35_9181	664	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_9181 664 Hv_44K_v2
GGAGTGACGTGAGCTCTAGTGGTGTGCCGTCGGAGTTTCTTAGTGGACGTAGCCGGACAG
ACTACCAGTTTGAAGGTGAACTGGAAACTGTGTCCTGGGTTTGATCCCATTCTTCTGACC
AAAAATACCGCAGAGGTTCTTGATCAAAATTTGGCAACTATGCATCAGAAGATGTAATAA
AGGTCTTTAGCACTGCCATTATTTGAATTATTCGAGCCCCTTCTGAGCGACTGACGACGA
GAGAAGTTGTGAAAATGCTTATGGACACTGATTCTACTTCCGTATTCGGAGGGCAAAGAA
CAAGAATAATAAGTAAAAGCAGGTTACCTTTCTTTGTAAGATGCCACTATCAACAGGATG
AGGACCTTTACACTCAGAATAGCAACAACACTCTGAAGTAGCCGATTAGGACCATAGAAT
GTATTACTAGTGAGCTGGAAGCAAGTAACTAGAAGGCTGTTAATAATAACCTGGAGATGT
AGTAGCATCTGGTAGCCTCATAGGCCATGTATCTGCAGCAGTTTCTGTATAAATTCAGTC
ATATAGCTTGCAGTTTCTGTAAAAATGTTAGATGATGACTTATTGTACTGCACTGTTAGA
TAATGATGAAACATAGCAGCGTAGTCTAATTTCGACTACTTGGATCGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_9181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None