barSeed - Barley Seed Development Database

Probe CUST_27417_PI390587928

Source Contig U35_6772

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27417_PI390587928	Hv_44K_v2	GCTGAATTCATTCATAGTTTGGCATTGGTTGGTTTATATGGTGAACAAGGGATACTTTTA	1023	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.528	2.901	0.917	0.871	0.482	0.848
Raw	63.973	88.477	23.570	32.921	5.944	12.417

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25892.1	791	8e-25	477 - 536	100	60 / 60	plus
Harvest21	ABC22558	1103	3e-25	21 - 80	100	60 / 60	minus	ABC22558
Harvest35	U35_6772	1103	3e-25	1024 - 1083	100	60 / 60	plus

Contig Sequence (1103 bp)

>U35_6772 1103 Hv_44K_v2
TGATCCCCGTCCATGGAGGCCGAGGACGACAGGCCCGCCGCCGGGTACCGGCACGGGCCG
CCATGGGTGTTCAAGGGCAGCGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCG
CGGGCGTTCGTGCCCAAGGACCTGCGCCTGGTGGAGGCCTTCGGCTACACGCTCGGCGGC
ATGTTCCTCGCGCGCTACCACGACAGCCCCGCCGGCCAGTTCGACGAGCTCGTGGTGATC
GCCGGCATTGTGTGGAACCCGCCGACTTCCTGCGCGTGGGCTGCCAGGGTGCTAGTAAAC
AGCGCTGAAGCCTGCCGGCATGGACGCAAGGAAGTGGGGCTTCCAAGCCATGTCGCGGCA
TTCTCACAGACTGAAGCTTCTGCGACCAGAAATAAACCAAACAGCTTCCTCAACATGCTC
GGGATGGGTTCAGGGTTCTGCAAGCAAGAGAATTACCGCGGCATCGAGATCTCGGAGGCC
TCGGGCTCGTCTGCAAGGCATTTGTGCAACATCAGTCTGCCGCTCAACGAAGTGTCAGGA
GGATCACATAAACGGAACAAGTGGATGGGTCCGGCAATCAAAATGTCACTCCCGAGCTTC
AGCGGCCAGACAGAGGATCATCCTGACCTTCTCAAGTACTCCTGCAAAGTAGAGTGCAGG
GTGCGGCCGGTGAGTCCAGCAAAGGTCTGGAGCCCTAAAACTGCAGAACCACGGGAGTGT
TCTGACGGCAGGAGCAGCGGCGCCGGGTCTGAATCAGATTCAGACGCGCAAAGGCAGAGC
GTCATGGTCTTGCTATCGAGGCCCATCTTGGCTCTGGAGTTCAGCTCCCTGCGGATGCAC
GTCGACGCGCCGAAGATTGTCGCTCCGCACCCCAAGAAGAAGGAAGTCAGATACTCCAGC
ACCTGAATCTCATACCCAGACCATGGTTCAGAAGACAGTAGACTTTGGGCACTGTCTGTT
GTTCTTTCATTTGTTCATAGGTTGCAAGTAAGATTATGCAGCTGGACACTGTGAAACCTG
CTCGCTGAATTCATTCATAGTTTGGCATTGGTTGGTTTATATGGTGAACAAGGGATACTT
TTATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35644.1	303	2e-152	protein\|expressed protein
Brachypodium v1_2	Bradi3g30027.1	278	5e-102
Arabidopsis v10	AT1G28100.4	290	7e-96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr1:9802120-9803981 FORWARD LENGTH=290