barSeed - Barley Seed Development Database

Probe CUST_27403_PI390587928

Source Contig U35_6787

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27403_PI390587928	Hv_44K_v2	TTCTCCAAGACGTCATCGGCGTTCATCTCTATGCCCACCGACCACGTCGGTGGCAGTATT	147	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54893.2	1419	2e-24	1121 - 1180	100	60 / 60	minus	ABC04424
MLOC	MLOC_54893.1	1373	2e-24	1171 - 1230	100	60 / 60	minus	ABC04424
JLOC1	JLOC1_35359.3	1414	8e-25	198 - 257	100	60 / 60	plus
JLOC1	JLOC1_35359.2	1581	8e-25	144 - 203	100	60 / 60	plus
Harvest35	U35_6787	613	3e-25	148 - 207	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_6787 613 Hv_44K_v2
CACGCTCACTTGCAGGCAGCTAGCAGCAAAGTAGCACTAGCAGACTGAAGGCACTGAGGT
GCTCAAGGTAGCTAGCTAGGATCAATGGCGTCGAGCAGGACAGCAGCGATGCTGGTCCTC
GTGGCCGCCGTGCTGTGCCCGGCAGCCTTCTCCAAGACGTCATCGGCGTTCATCTCTATG
CCCACCGACCACGTCGGTGGCAGTATTCCTCCGGTCTCCCCCGCCGAAGGGCTCGCCTTC
GACTTCCACGCCGACTCCTGCCCGCAGCTACAGGACGTGGTGCGCTCCGCCGTGCAGACC
GCGCTCCAGAGCGAGATCGCCCTCGCCGCCGGCCTCCTCCGCATCTTCTTCCACGACTGC
TTCCCTCAGGGTTGTGATGCGTCGGTCCTTCTAACGGGAGATGGCAGCGAGCTGCAACTG
GCACCGAACCTGACGCTGCAGCCACGGGCGCTGCAGCTCATCGAGTCCATCCGCGCCATG
GTGCACGCAGCCTGCGGTCCCGTCGTCTCCTGCGCCGACATCACGGCCCTCGCTACCCGT
GACGCCGTCGCCTTCTCCGGGGGTCAGGGCTACGACGTGCCGCTCGGCCGGCTCGACAGC
CTCGCGCCGGCCC

Homology of Contig U35_6787 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59160.1	349	3e-73	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27200.1	325	1e-61
Arabidopsis v10	None