barSeed - Barley Seed Development Database

Probe CUST_2738_PI390587928

Source Contig U35_9188

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2738_PI390587928	Hv_44K_v2	GTGTTGCTTTCAGCATGGATGTTATGTGCAATCTTCTCATAGAATGATTTTGTGAACTTT	452	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51141.4	1562	2e-24	1439 - 1498	100	60 / 60	plus	ABC18762
MLOC	MLOC_51141.3	7988	2e-24	1020 - 1079	100	60 / 60	minus	ABC08959 ABC18762 ABC47652
MLOC	MLOC_51141.1	4049	2e-24	2268 - 2327	100	60 / 60	minus	ABC18762
MLOC	MLOC_51141.2	4450	2e-24	2302 - 2361	100	60 / 60	minus	ABC18762
JLOC1	JLOC1_32643.1	4516	8e-25	1319 - 1378	100	60 / 60	plus
JLOC1	JLOC1_32642.2	3830	8e-25	2224 - 2283	100	60 / 60	minus
JLOC1	JLOC1_32642.1	4434	8e-25	2828 - 2887	100	60 / 60	minus
Harvest21	ABC18762	583	3e-25	73 - 132	100	60 / 60	minus	ABC18762
Harvest35	U35_9188	584	3e-25	453 - 512	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_9188 584 Hv_44K_v2
GACGGCGTCGGCATGACGCTGCTCCTCCATGCCAACGACGTGCAAGGACTGCAGATCAGG
AAGGACCGAGAATGGTTCTCCGTGCAGGCCCTGCCCGGAGCTCTCGTCGTCAACATTGGC
GACGTCCTTGAGATCCTCAGCAATGGCAAGTACAGGAGCATCGAGCACAGGGCGGTGGTT
AACCCCGACAAGGAGAGGATCACCATTGCGGCGTTCCACAGCGTGCACCTTCCCTGCACC
ATCGGCCCATTTCAGGAGCTGGGCGACCCTCGCTACAGGGCGGTCGACGGCCTCGACTTC
ACCAAGGGATACTTCGCGGCCAAGCTGGAAGGCAGGAGATACCTGGAGAGTTTGAAGCTA
TAGGCATATGATGGTCACTGGTCAGAGTGATGAGTGTTACGATTAATTCCCTTGGTTTGA
TACTACTCCTGTTGCTTTCCTATGCCTCAGATGTGTTGCTTTCAGCATGGATGTTATGTG
CAATCTTCTCATAGAATGATTTTGTGAACTTTTTCTTTGAAGAACAGAATGTTTTGTGGA
CATTTTTGAAGAACATAATATTTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41020.1	361	4e-59	protein\|flavonol synthase/flavanone 3-hydroxylase, putative, expressed
Brachypodium v1_2	Bradi3g33230.1	355	1e-66
Arabidopsis v10	None