barSeed - Barley Seed Development Database

Probe CUST_27387_PI390587928

Source Contig U35_11803

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27387_PI390587928	Hv_44K_v2	TCACAAGGCAGTGGACTTCATCTCCGACTACTACACCAACGTCGAGTCCATGCCGGTCCT	224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23938.1	604	2e-24	406 - 465	100	60 / 60	minus	ABC11623
JLOC1	JLOC1_16509.1	605	8e-25	312 - 371	100	60 / 60	minus
Harvest21	ABC25708	700	3e-25	225 - 284	100	60 / 60	plus
Harvest35	U35_11803	702	3e-25	225 - 284	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_11803 702 Hv_44K_v2
TCTTCTGCTTCTTCTTCTTCCTGCTCTCCGGCAGCAAAGCAAAGAGAGCTAGCTCCGCTT
CATCAACCAAGAAACCTCACACCTCCTTTGCTCCGATCCTAACCAAGGGTTAAGCCTCCT
ACAAGAATGGGCAGCTTGGACGCCAACCCAATGTCCTTCTCGGCTTTCCCCGGCGACAAG
GCTGCGTTCGAGCCGCTCAACCCCCAAGATGTTCGTGCATACCTTCACAAGGCAGTGGAC
TTCATCTCCGACTACTACACCAACGTCGAGTCCATGCCGGTCCTCCCTAACGTGAAGCCG
GGATACCTCCAAGACGAGCTCAGCGCGTCCCCACCGACCTACTCCGCTCCGTTCGATGTC
ACTATGAAGGAGCTCAGGACGTCTGTCGTCCCCGGCATGACGCACTGGGCTAGCCCAAAC
TTCTTCGCCTTCTTCCCCTCAACCAATAGCGCCGCTGCTATCGCCGGCGACCTCATCGCA
TCTGCCATGAACACCGTTGGATTCACATGGCAGGCCTCCCCCGCGGCCACTGAGATGGAG
GTTCTCGCTCTCGACTGGCTTGCACAGCTTTTGCGCCTACCCACCACCTTCATGAACCGC
ACCAGCACTGGTCGTGGCACCGGCGGTGGCGTCATCCTCGGCACGACCAGCGAGGCAATG
CTTGTTACGCTAGTCGCCGCTCGGGACGCAGCCCTGCGTCGG

Homology of Contig U35_11803 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04540.1	515	2e-82	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g14740.1	511	5e-89
Arabidopsis v10	None