- Probe CUST_27378_PI390587928
- Source Contig U35_11813
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27378_PI390587928 | Hv_44K_v2 | CCTTCCACGACGAATATCTACATTGTAGCAGGTGAAATATATGGTGGACATAGTATGGAC | 497 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.410 | 0.342 | 1.317 | 2.343 | 1.114 | 1.354 |
| Raw | 3.259 | 3.459 | 22.731 | 59.087 | 10.027 | 14.104 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357718 | 2483 | 2e-24 | 1568 - 1627 | 100 | 60 / 60 | plus | None |
| MLOC | AK360384 | 2491 | 2e-24 | 1470 - 1529 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_15973.2 | 1908 | 2e-24 | 964 - 1023 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15973.4 | 1779 | 2e-24 | 836 - 895 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15973.3 | 2079 | 2e-24 | 963 - 1022 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15973.5 | 1971 | 2e-24 | 1027 - 1086 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15973.6 | 2209 | 2e-24 | 718 - 777 | 100 | 60 / 60 | minus | ABC17600 |
| MLOC | MLOC_15973.1 | 3454 | 2e-24 | 2333 - 2392 | 100 | 60 / 60 | minus | ABC17600 |
| JLOC1 | JLOC1_10985.2 | 2936 | 8e-25 | 898 - 957 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10985.1 | 2923 | 8e-25 | 885 - 944 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10984.2 | 2286 | 8e-25 | 1631 - 1690 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC24565 | 560 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11813 | 560 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus |
Contig Sequence (560 bp)
>U35_11813 560 Hv_44K_v2 GTGTGGACTCCTTGCCGCCAGCTTACAGAAGGTCGAAACTCTATACGAGGGCACCATCTT CCTGGTCCAGGGCTTCTTACTACAGAGCTTTTGCACGGACACTAAAGAAGGTCAAAGTTG TTAAATTCACACACACAGATTCACGAATTGTCAACAACGGTCTTGCTCCTCATATCCAAC AACTCCGCTGCCGGACAAATTACGAGGCACTAAAATACAAAAACGAAATTGAAGATCTAG GTAATACTCTAGTTGATAGACTGAGGAATGGGTCCAACCATTATATCGCACTTCATTTAA GATATGAGAAGGACATGCTCTCATTTACTGGCTGCAGCCATAATCTAACACATCAGGAGG CAGAGGAGCTGAGAGAAATGAGACTCAAGGTACGGCACTGGAAAGAAAAGGAAATTAACA GCAGGGAGAGGCGACTTCAAGGAGGCTGTCCTATGACTCCTCGTGAAGCAGCTTTTTTTC TTAAAGCTATGGGCTATCCTTCCACGACGAATATCTACATTGTAGCAGGTGAAATATATG GTGGACATAGTATGGACGAA
Homology of Contig U35_11813 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g63230.1 | 575 | 1e-107 | protein|growth regulator related protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g55090.1 | 551 | 1e-117 | |
| Arabidopsis v10 | AT2G37980.1 | 638 | 4e-87 | O-fucosyltransferase family protein | chr2:15894162-15897452 REVERSE LENGTH=638 |