barSeed - Barley Seed Development Database

Probe CUST_27337_PI390587928

Source Contig U35_23819

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27337_PI390587928	Hv_44K_v2	TTCGCTCCTCTTCTTGCTCAGCAGCCGCCACGGCGTCGACAAGAAGGCGACTGGTAAGGA	88	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360529	1787	2e-24	95 - 154	100	60 / 60	plus	ABC04549 ABC10985
MLOC	MLOC_3244.1	630	2e-24	375 - 434	100	60 / 60	plus	None
JLOC1	JLOC1_1944.1	688	8e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC25714	616	3e-25	82 - 141	100	60 / 60	plus
Harvest35	U35_23819	623	3e-25	89 - 148	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_23819 623 Hv_44K_v2
GCGTCAGAATAGCTTGAGCTGCAACGATGGATCTCACGGCCTGGCCACCGCTCCTCTTGC
TCATCACTCTCTTGCTCTCGCTCGCAGCTTCGCTCCTCTTCTTGCTCAGCAGCCGCCACG
GCGTCGACAAGAAGGCGACTGGTAAGGAGCTCCCCCCAGGCCCGCCGGCGCTGCTCTTCC
TGGCCAAGTTCCTAGCACTCCGGCAGTCCATCTTCCACCTTGAGCCGCTCCTCCGCGACC
TGCACGCGCGCTACGGCCCCGTCATCTCCATCCGCCTCTTCCGCGCCCTCGTCTTCGTCT
CCGACCGCCGCCTCGCCCACCGCGTCCTCGTCCAGGGCGGCTCCACCTTCGCCGACCGCC
CGCGGCTCTTCGAGCCGGGGCTCCTCTTCACGTCCGGCTCCCGCAACATCAACGCCGCGC
CCTACGGGCCTTACTGGCGCCTCGTCCGCCGCAACCTCGCCTCCGAGGCGCTGCACCCGG
CCTGCGTCAGCCAGTTCGCGCCCGCGAGGCGCCGGATGCGCGACACGCTCGTCCGCGACC
TCCGCGTGCGCGCCGGCGCCGGAGACCCTGTAGAGGTGAGGACGCTGCTCCGGAACGCCA
TGTTCGACCTGCTGGTGTACATG

Homology of Contig U35_23819 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01890.1	505	3e-60	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g43890.1	511	1e-68
Arabidopsis v10	None