barSeed - Barley Seed Development Database

Probe CUST_27284_PI390587928

Source Contig U35_2750

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27284_PI390587928	Hv_44K_v2	TGTAAAATCGTGCCATTTGAGCCAGTTAATACGCAGTGGAATACTACTCCCTCCAAAAAA	1515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363050	3782	2e-24	922 - 981	100	60 / 60	minus	ABC02427 ABC02434 ABC06657 ABC06732 ABC08493 ABC30622
MLOC	MLOC_65725.1	1939	9e-22	28 - 82	100	55 / 55	minus	ABC06732 ABC30622
JLOC1	JLOC1_43266.1	1851	5e-22	136 - 190	100	55 / 55	minus
Harvest21	ABC06732	1586	3e-25	1516 - 1575	100	60 / 60	plus	ABC06732
Harvest21	ABC30622	387	2e-22	283 - 337	100	55 / 55	plus	ABC30622
Harvest35	U35_2750	1586	3e-25	1516 - 1575	100	60 / 60	plus
Harvest35	U35_30624	387	2e-22	283 - 337	100	55 / 55	plus

Contig Sequence (1586 bp)

>U35_2750 1586 Hv_44K_v2
CAGTACTAGTTTCTTTTAGTTTCTCTCAAATTACCTTTTAGTTACCCGGCGCTATCGGCA
TCGTTTGTACTACTACTCTACTACCAGGCAGATTTCCAGGCCAAGAAACGGACCAACAGC
TAGCTAATCGGTGCCGTTACTGGTCATGGCCGCCGCGAGTTTCATCAAGGCGCCCGCCGG
GCAGAATCCCAGGCTGGCAGTCCACGCTCCGGGGAGGAGCGGCCGCGTCGTCAGGTGCTC
GCTTGGCGCGGCCGTCGGCGGCCGGACCGAGTGGCTGAGCAGCTGCGCCGTCCTCTCCAG
CAAGGTGGCCGCGCTCGGCCCCCACTCCGTCAACGGCCACGCCGCGCCGGCGCCGGCCCC
CAACGGCGCGGTGCTCGATTTGATCCCCGTCAGCGGTGTTAACGGCGCCGCCAAGAACCT
GCCGGCGCCGCTGCGGATTGCGGACCTGTCCCCGGCGCCGATGCACGGCTCTGAGCTGCG
CGTGGCGTACCAGGGCGTGCCGGGCGCGTACAGCGAGAAGGCGGCCGGTAAGGCCTACCC
GGGCTGCGACGCCATCCCCTGCGACCAGTTCGAGGTTGCGTTCCAGGCCGTGGAGCTCTG
GATCGCGGACCGGGCCGTGCTCCCCGTGGAGAACTCGCTCGGCGGCAGCATCCACCGTAA
CTACGACCTCCTGCTCCGCCACCGGCTCCACATCGTCGGCGAGGTGCAGCTCCCCGTGCA
CCACTGCCTCCTCGCGCTCCCGGGCGTGCGCAAGGAGAACATCACCCGCGTCATCAGCCA
CCCGCAGGCGCTGGCGCAGTGCGAGCACACCATCACCCGCATGGGCCTCAACGTCGTCCG
CGAGGCCTTCGACGACACCGCCGGCGCCGCCGAGTACGTGGCCACCAACGGCCTCCGCGA
CACGGCCGCCATCGCGTCGTCCCGCGCCGCCGAGCTGTACGGCATGGAGATTCTCGCCGA
CGGAATACAGGACGACTGCGGCAACGTGACCCGGTTCGTGATGCTGGCAAGGGAGCCCAT
CGTGCCGCGCACGGACAGGCCGTTCAAGACGAGCATCGTGTTCGCGCACGACAAGGAGGG
CACCTCCGTGCTCTTCAAGGTGCTCTCGGCCTTCGCCTTCCGCGACATCACGCTGACCAA
GATCGAGAGCCGGCCGCACCGCCACCGGCCCATCCGCCTGGTGGACGACGCCAACCGCGG
CACGGCGAAGCATTTCGAGTACATGTTCTACGTGGACTTCCAGGCCTCCCTAGCGGAGCC
GCGGGCGCAGAACGCGCTGGCCGAGGTCCAGGAGTTCACGTCATTCCTGCGGGTGCTCGG
GAGCTACCCGATGGACATGACCCCCATGACCGCCGGCTCCTCCTCCACCGTCACATCGTC
CGACTCGTAGCTCCCTGGAGAATCAGTGGAGCAGTAGGGACGTCGGTTAATTTGTGGTCA
TGTCGTCCCACTCCTCCCTCGTTGGCAGCTGGGGTAATTAGTTTTGTTCTTCGATGTTCT
TGTTGTCATAATACCTGTAAAATCGTGCCATTTGAGCCAGTTAATACGCAGTGGAATACT
ACTCCCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g33390.1	437	protein\|prephenate dehydratase domain containing protein, expressed
Brachypodium v1_2	Bradi5g09030.1	420
Arabidopsis v10	AT1G08250.1	413	\| Symbols: ADT6 \| arogenate dehydratase 6 \| chr1:2588994-2590235 REVERSE LENGTH=413