barSeed - Barley Seed Development Database

Probe CUST_27265_PI390587928

Source Contig U35_33237

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27265_PI390587928	Hv_44K_v2	AAAGCAAAGCCAGAAAAGATAAGCAGGGAAGCACCAAATTCAAACGATAAGCTCTAAACT	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14228.2	1214	2e-24	123 - 182	100	60 / 60	plus	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC	MLOC_14228.1	3110	2e-24	169 - 228	100	60 / 60	plus	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
JLOC1	JLOC1_9707.1	2182	8e-25	1995 - 2054	100	60 / 60	minus
Harvest35	U35_33237	638	3e-25	386 - 445	100	60 / 60	minus

Contig Sequence (638 bp)

>U35_33237 638 Hv_44K_v2
TAGAACTTCGTACAGATCCTTATTTTCAAGATGGATTACATACGTAGACCTATAGTAGCG
CATGCAACATACGTAGGCACAGTGCACGTGCTGGCCAATATTACAAACTTTGACAAATTA
AAATGGATGGATCTGGAATTCTAGATTTAAAGCAAGTGAGCTTTAATCAGTCGATCTACC
ACCTTTCATAAGAGGAAAGACTGGGCGTGTTGCAATGCCACACTGCCCTGATGAATGCTT
TATTCCCCTCTTCATTAGTATGTAGCCTTTGTCGCCCCATGTTGTCCAGCGGCCCTGCAG
GAAGTAGTAATAGTGGTTGGATGGAGTTGTTTTGTCTGAGGACATGATGGATCATAATGT
TTGCTTGTTGGTTTGGAACCGTTGAAGTTTAGAGCTTATCGTTTGAATTTGGTGCTTCCC
TGCTTATCTTTTCTGGCTTTGCTTTTATTTTTGTTCGTCTATGGTTCTGCTCTGTTTATT
TATGTTCATCTGTGGCACACGGATGATGCAGTCATGCAGACGAAGGCGCTTGTAGACCAT
GGAGCTTTGCCCTTCGGCATGGTGGAGTTTGCAGGACACACCCACGACCACAATGTTGTA
AAGTCACTGGGTCATGATTTTACTCTGTTCAGNNTTTG

Homology of Contig U35_33237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None