barSeed - Barley Seed Development Database

Probe CUST_27254_PI390587928

Source Contig U35_21262

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27254_PI390587928	Hv_44K_v2	GGGAGATTCAACAGTATGGAAATCCTCCAGTGTTTCCTGCTGCAGATGATGATTCAAGTG	483	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363274	3768	2e-24	408 - 467	100	60 / 60	plus	ABC06948 ABC06949 ABC06950
MLOC	AK362746	3948	2e-24	483 - 542	100	60 / 60	plus	ABC06948 ABC06949 ABC06950
MLOC	MLOC_21837.1	1086	2e-24	590 - 649	100	60 / 60	plus	None
JLOC1	JLOC1_15138.1	966	8e-25	412 - 471	100	60 / 60	plus
Harvest35	U35_21262	591	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_21262 591 Hv_44K_v2
TCGAGCACTGTTGGCCTTACTGGAGGATAAACCCTAGCCCCCTACACCCGCAGCCCTCCT
CCTCCGTCGCCGTCGCCGTCGCTTTTCTGCTGGCTCCCGGTTTGCTCCCCGCCCTGAGGC
TGCTGCGGCTCCCTGCCTCGCGCGCCGTCGTCAGGAAAATGTCGTCAAGTACTGATGGAG
CCAAGAGTCATGCACGTAGAGACCTTTTGCTCAAGATCCAATCAGAAGCTCAAACATGTT
GGGAGGAGAGCAAGGTTTTTGAGGCTGAACCTGGCAATGGACTTCCTGGCCCTGGTGAAA
AATTCTTTGGCAATTTTCCGTACCCTTACATGAATGGACTTCTACATTTGGGGCATGCCT
TCTCATTGTCCAAGCTTGAATTTGGTGCTGCATACCACAGACTCCGTGGCTCAAATGTCC
TTTTGCCGTTTGGTTTTCATTGTACTGGGATGCCCATCAAGGCCTCAGCTGATAAGCTTG
CTAGGGAGATTCAACAGTATGGAAATCCTCCAGTGTTTCCTGCTGCAGATGATGATTCAA
GTGCTGNAATGGCAGATGATAGCCAGGCTGACCAGGCTGCTGTTCTTGCCC

Homology of Contig U35_21262 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32650.1	1096	4e-65	protein\|leucyl-tRNA synthetase, cytoplasmic, putative, expressed
Brachypodium v1_2	Bradi3g33360.1	1071	6e-72
Arabidopsis v10	None