barSeed - Barley Seed Development Database

Probe CUST_27253_PI390587928

Source Contig U35_21263

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27253_PI390587928	Hv_44K_v2	ACTATGTGGCTCGAATGTCCTTTTGCCGTTTGGTTTTCATTGTACTGGGATGCCCATCAA	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356763	3864	2e-24	485 - 544	100	60 / 60	plus	ABC06948 ABC06949 ABC06950 ABC40620
MLOC	MLOC_4767.1	1945	2e-24	1242 - 1301	100	60 / 60	minus	None
JLOC1	JLOC1_3014.1	1835	8e-25	534 - 593	100	60 / 60	plus
Harvest35	U35_21263	621	3e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_21262	591	8e-21	406 - 460	98	54 / 55	plus

Contig Sequence (621 bp)

>U35_21263 621 Hv_44K_v2
ATCAGATCTTTTTCTTTTGAGAACAGCCCCTAGCCTCGTGAGTCAAGTTCCTTGGGCGGC
CCGTTCCAGCCTGAATCTGGTTCGTGCACGCCAAGTCGCGAATCAAGGCCCACGTGACAG
TGTGCCAGGATAAACCCTAGCCCCCTCCATCCGCAGCCTCCTCCTCCTCCTCCTCCGTTC
CCGTCGCCGTCGCCGTCGCCGTCGCATTCTGCTGGCTCCCGGTTTGCTCCCCGCCCTGAG
GCTGCTGCGGCTCCCTGCCTCGCGCGCCGTCGTCAGGAAAATGTCGTCAAATGCTGAAGA
ACCCAAGAGTCATGCACGTAGAGACCTTTTGCTCAAGATCCAAACAGATGCTCAAACGTG
CTGGGAGGAGAGCAAGGTTTTTCAGGCTGAACCTGGCAGTGGACCTCCTGGCCCTGGTGA
AAAATTCTTTGGCAATTTTCCATACCCTTACATGAATGGATTGCTGCATTTGGGTCATGC
CTTCTCACTGTCCAAGCTTGAGTTCGGTGCTGCATACCACAGACTATGTGGCTCGAATGT
CCTTTTGCCGTTTGGTTTTCATTGTACTGGGATGCCCATCAAGGCCTCAGCTGATAAGCT
TGCTAGGGAGATTCACAGTAT

Homology of Contig U35_21263 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None