barSeed - Barley Seed Development Database

Probe CUST_27233_PI390587928

Source Contig U35_21272

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27233_PI390587928	Hv_44K_v2	TCAGTCTCAGCCATGGTTTATAGTCCTGTATATATTGTATTTATACATCACTGTGGAGCT	1050	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21344.2	1092	2e-24	200 - 259	100	60 / 60	minus	ABC16291
MLOC	MLOC_21344.3	1119	2e-24	148 - 207	100	60 / 60	minus	ABC16291 ABC30267
Harvest35	U35_21272	1159	3e-25	1051 - 1110	100	60 / 60	plus

Contig Sequence (1159 bp)

>U35_21272 1159 Hv_44K_v2
GCTGCAGGACTGTCCCCCTCCCGCGAATCCTGTGTCGCCGTCTTGCGCAGCACACCTCCG
GATCCATCTCTCGTGCCCGCAACCCTCACCCGTGGTGGACCTTGTTGCCAGATCGCTGGA
TCTGATGAATCCGCTCCTCTCCGACAAGGCCACAGCTGGATCGGGTCCTCCGCAACAAGG
CCACCATTGGATCCCCTCCTCTCCTCCGCTCCGCCCTCTCCAGTAGCTCTCCATCGCCCT
CGCGCCCCAGATCCAAACCACCAGCAGTTCGAGGCGAAACCCTCGTGCTCATCACCTCCA
TCTCCACCACGGAGGGAAGGCGAAGCCGCTCAAGCAGGCCAAGGTCGCCGAGAAGGACTA
CAACGAGATGCACGCTGATGATTTCCGGCAAGACCTGTATGGTTTAGTCACAGCACTAAA
AAATGGTGGTTACTCAGATGATATGACCCTTGCTGCAATCGCTGGTAATATTTTGAGCAT
GGAATCACATCTTTTCTGATGCGTAGCTATAAAGTCTGCATTAGTAATGGAAACTAATTT
TGATAATGTATGCAATGTTAACCTTACATTACATGCTCAAAGTCGCTATATAACAGCCAT
TTATCCTTTTTCTCTTTGAGATTTTGGCTTTTGCCTCTATTAAATTGCGGATGTATTATA
ATATAACATTTTTTGCAAGTAACTTGAATGCATCCTTTATATAGCGCAACATAAGCGGCT
GAAACTTCACCACCTGTTGTTGTGTTTCCACACCCTCTTGCAAGTGATCTCAACTTCTAG
CTTGCATTAGAAACATATTCACCTCATCTACATTCAGTTTACATCGCATTTTATTGGCAT
GCCATGTTTTTCGTGCAGATACTGGAATTATCTAAGGAAACAAACTTTTGTTCTTGAATC
GTATGTATCAAAGGTCAACTGGATAATGTATCGTGCACTGTTTGGTGTACATTTCTATTT
GTCATGTGGATTTGTTTGTCCCTATGTTATGGCTTTGGTATCTTGCACACTTTCCGTCTT
CTGTGTTACTGTTAGTTTCTAAATCTGGTCTCAGTCTCAGCCATGGTTTATAGTCCTGTA
TATATTGTATTTATACATCACTGTGGAGCTTAATTTCATCCTAAATAAAAGATGCTTTTA
ACAAAAAAAAAAAAAAAAA

Homology of Contig U35_21272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None