barSeed - Barley Seed Development Database

Probe CUST_2722_PI390587928

Source Contig U35_14205

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2722_PI390587928	Hv_44K_v2	CGGGCCTAGAAAAAAGGAAAGATATTAAGGTTGCAACAAATGGTACGCATGTAATACGTC	1724	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60734.2	1451	7e-23	801 - 860	98	59 / 60	minus	ABC00268 ABC00278 ABC00431 ABC12084 ABC37216 ABC38668
MLOC	MLOC_60734.5	970	7e-23	232 - 291	98	59 / 60	minus	ABC00268 ABC00278 ABC00431 ABC12084 ABC37216 ABC38668
MLOC	MLOC_60734.4	693	7e-23	232 - 291	98	59 / 60	minus	ABC00268 ABC00278 ABC00431 ABC12084 ABC37216
JLOC1	JLOC1_39632.1	1652	4e-23	592 - 651	98	59 / 60	plus
Harvest35	U35_14205	1833	3e-25	1725 - 1784	100	60 / 60	plus

Contig Sequence (1833 bp)

>U35_14205 1833 Hv_44K_v2
CTAGTGGGATCCCCCGGGACTGCTTGTAGGTCGGCACCAGTTGATCCGGTGAAGTGAGAG
ATCAGTTCTCGATTTCGATTCCGGGCTCACAGAATTTTTCGATTCAAGGCGACGCGAAGC
GACAGAGAAAGATGGCGACGGCCGGCAAGGTGATCAAGTGCAAAGCCGCGGTGGCGTGGG
AGGCCGGGAAGCCGCTGACCATGGAGGAGGTGGAGGTGGCGCCGCCGCAGGCCATGGAGG
TGCGCGTCAAGATCCTCTTCACCTCCCTCTGCCACACCGACGTCTACTTCTGGGAGGCCA
AGGGGCAGACCCCCATGTTCCCTCGGATCTTCGGCCATGAAGCTGGAGGCATAGTGGAGA
GTGTTGGAGAGGGCGTGACTGATGTTGCCCCTGGTGACCACGTCCTCCCTGTGTTCACTG
GGGAGTGTAAGGAATGCCCACATTGCAAGTCTGCGGAGAGCAACATGTGTGATCTGCTCA
GGATCAACACCGACAGAGGTGTGATGATCGGGGATGGCAAGTCGCGCTTCTCTATTGGCG
GCAAGCCGATTTACCATTTCGTAGGGACTTCCACCTTCAGTGAGTACACTGTCATGCATG
TCGGTTGTGTTGCCAAGATCAACCCTGAGGCTCCCCTTGATAAAGTCTGTGTTCTTAGCT
GTGGTATTTCCACTGGTCTTGGCGCGTCAATTAATGTTGCAAAACCACCAAAGGGTTCCA
CAGTGGCGATATTTGGGCTAGGAGCTGTTGGCCTTGCTGCTGCAGAAGGTGCAAGGATTG
CAGGTGCATCAAGGATCATTGGTGTTGACCTGAACGCCAGCAGATTTGAAGAGGCTAGGA
AGTTTGGCTGCACGGAATTTGTGAACCCGAAAGATCACACCAAGCCAGTTCAGCAGGTGC
TCGCTGACATGACAAATGGCGGAGTTGACCGCAGTGTTGAGTGCACTGGCAACGTCAATG
CTATGATACAAGCATTTGAATGTGTTCATGATGGCTGGGGTGTAGCTGTGCTGGTGGGTG
TGCCACACAAGGACGCTGAATTCAAGACCCACCCGATGAACTTCCTGAATGAGAGGACCC
TGAAGGGCACCTTCTTCGGTAACTTCAAGCCGCGCACTGACCTGCCCAATGTCGTGGAGA
TGTACATGAAGAAGGAGCTGGAGGTGGAGAAGTTCATCACACACAGCGTGCCGTTCTCGG
AGATAAACAAGGCCTTCGACCTTATGGCGAAGGGGGAGGGCATCCGTTGCATCATCCGCA
TGGACAACTAGGCGTCCTCCTCAAGTGCTTCTGATCGCTCCGATGTAATAAGCGCTGGGG
GCCGGCTTCTGAACCAGATCATCGGTGATGGTAATACACTTCCATGTATCATCGTCTGCG
GTTTCGCCTTCCTTGGCCAAAGTAGCGTAATATTAGTTATGTATATCTGTAATTACCTTA
CCGGAGAAGTGGTTGTACTACGAGCTCTTTTTCGGCAGCAATGTATGCTGCTGCTGCTGC
TGCTACTATGGCCATGAGTTTCAGTTGAATCAGTCTGTTCTCAACCTGATGTTTCCAAAA
AAAAAAAAAAAAAATCTTCTTGCTGCGTTGCTTATTGAGTATGTATTTCCTACTGCTTGG
CTGAATCTTCTGGGACGTGCTTATGGTATTTGGAACTGAAGGTACTACTTGGTCTGAAAG
TTCAGGCGATGTAGTGTGCTTTCTGTTTTCACCGTTTAAAAAGACGGGCCTAGAAAAAAG
GAAAGATATTAAGGTTGCAACAAATGGTACGCATGTAATACGTCATTTATTGTAATCTAA
AAAGGTACTATTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14205 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g10480.1	380	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g22630.2	380
Arabidopsis v10	AT1G77120.1	379	\| Symbols: ADH1, ADH, ATADH, ATADH1 \| alcohol dehydrogenase 1 \| chr1:28975509-28977216 FORWARD LENGTH=379