barSeed - Barley Seed Development Database

Probe CUST_27038_PI390587928

Source Contig U35_15198

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27038_PI390587928	Hv_44K_v2	CATACTCTTCCTGCATATTTGAGTTGAGGCTTCAATAAAACCCACACCCTTCCTGTCAAA	1529	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359180	1658	9e-22	1602 - 1656	100	55 / 55	plus	ABC02943 ABC02946
MLOC	MLOC_55181.2	2099	9e-22	1592 - 1649	98	57 / 58	plus	ABC02943 ABC02946 ABC07624
JLOC1	JLOC1_35583.1	2123	5e-22	1613 - 1670	98	57 / 58	plus
Harvest21	ABC02945	1605	3e-25	1532 - 1591	100	60 / 60	plus
Harvest35	U35_15198	1603	3e-25	1530 - 1589	100	60 / 60	plus

Contig Sequence (1603 bp)

>U35_15198 1603 Hv_44K_v2
GCCTCCCCGTCTTCGTCTCCGGCCAGTTCGTTCGCCAGATCCTACCGCCACGCGCTCGCA
AGGGTTCGCCGTCGTCATCAGCACCAGCCAGCCAGCCATGGCCACCGGGAAGCACTTCAA
GTACATCGTCCTCGGCGGCGGCGTCTCAGGGGGCTACGCGGCGCGGGAGTTCGCCAAGCA
GGGCGTGCAGCCAGGGGAGCTCGCCATCATCTCCAAGGAGGCCGTGGCACCTTACGAGCG
CCCTGCCCTCAGCAAGGCGTACCTGTTCCCTCAGAGTCCTGCAAGGTTGCCAGGATTCCA
TGTGTGCGTGGGAAGTGGAGGCGAGAGGCTCTTGCCTGAATGGTACTCAGAGAAAGGTAT
TGAGCTTATCCTGAGCACTGAAATTGTCAAAGCTGATCTTGCCTCCAAGACTCTGACTAG
TTCAGCTGGAGCAACCTTTACATATGAGATTTTGCTAATTGCTACTGGCTCCTCGGTCAT
TAAGCTCTCTGATTTTGGCACTCAAGGAGCTGATTCCAACAACATTCTGTACCTAAGGGA
AGTTGACGACGCGGACAAGCTGTATGCAGCCATCCAAGCAAAGAAGGGCGGGAAGGCAGT
GGTTGTTGGAGGAGGTTACATTGGCCTTGAACTAAGCGCTGTATTGAAGATGAACAATCT
TGATGTGACTATGGTGTTCCCTGAACCTTGGTGCATGCCCCGTCTCTTCACTGCCGAAAT
TGCAGCTTTCTACGAGAGTTACTATACTAACAAAGGAGTCAAGATCGTGAAGGGTACAGT
TGCTGTTGGTTTTGATGCTGACGCCAATGGTGATGTGACTGCAGTTAAGCTAAAGGACGG
CAGCGTGCTCGAAGCTGATATAGTTGTCGTCGGTGTTGGGGGCAGACCGTTAACTGGTCT
CTTCAAAGGCCAGGTTGCCGAGGAGAAAGGTGGAATCAAGACCGATGCTTTTTTCGAAAC
AAGTGTCCCTGGAGTGTATGCCGTCGGCGACGTGGCCACCTTCCCGATGAAGATCTACGA
CGACGTGAGGAGAGTGGAGCACGTCGACCATTCCAGGAAGTCCGCGGAGCAGGCCGTGAA
GGCAATCAAGGGGAAGGAGGCGGGCTCCGCCGTGGCGGAGTACGACTACCTGCCCTACTT
CTACTCGCGGTCGTTCGACCTGTCGTGGCAGTTCTACGGTGACAACGTCGGCGACGCCAT
CCTGTTCGGCGACGCCGACCCCAGCTCCGCCAAGCCCAAGTTCGGGTCGTACTGGGTCAA
GGACGGCAAGTGCGTGGGCGTGTTCCTGGAGGGCGGGTCGCCGGACGAGAACGGCGCCAT
CGCCAAGCTCGCGAGGGACCAGCCGCCCGCCGGCAGCCCCGCGGAGCTCAAGGCCGCCGG
CCTCCAGTTCGCCACCAGCAAGATCTGAACCTCGGTGTCCTGGGTGTATTTGTTACATGG
ATACTAGACCACCATACGTACATGCATACATACATAGTAGCTGACTACACAGTACAATTG
GTCGATGCTATTGTGATGTCTGTGTACCACATACTCTTCCTGCATATTTGAGTTGAGGCT
TCAATAAAACCCACACCCTTCCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15198 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g39380.1	448	protein\|monodehydroascorbate reductase, putative, expressed
Brachypodium v1_2	Bradi4g38430.1	436
Arabidopsis v10	AT3G52880.2	466	\| Symbols: ATMDAR1, MDAR1 \| monodehydroascorbate reductase 1 \| chr3:19601477-19604366 REVERSE LENGTH=466