barSeed - Barley Seed Development Database

Probe CUST_26978_PI390587928

Source Contig U35_39174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26978_PI390587928	Hv_44K_v2	AAGGTTCAAAAGATAAATGGATGAGTATATATGGGTGGGTGGCAAGTATACTTCAATGAG	281	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.381	1.748	1.445	0.794	0.374	0.498
Raw	115.385	236.054	169.371	145.662	23.827	35.517

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC35191	647	3e-25	282 - 341	100	60 / 60	minus	ABC35191
Harvest21	ABC12300	1307	1e-23	1011 - 1067	100	57 / 57	plus	ABC12300
Harvest35	U35_39174	647	3e-25	282 - 341	100	60 / 60	minus
Harvest35	U35_20169	1307	1e-23	1011 - 1067	100	57 / 57	plus

Contig Sequence (647 bp)

>U35_39174 647 Hv_44K_v2
TTTTTTTTTTTTTTTTTATACTCACGAGAGAAAGAAATCATATATTACATAAAAATGTTA
GATTACAATATTGGAAATTACATGAGGAACATCATCCAAATGTGATGCATAATCTAACTA
TTTTCTTGCCAGTGAAACTTAAACTGAAAGCATCCATCAACATCCCTACAACTTAACCAA
AACAAGACCGACAAACAACATCCAACGGGAACGACATCCCTACTACTTAAATAAAACTGA
AATCATCCATCATCATCACCATGATCCAGAAAATCAACATCCTCATTGAAGTATACTTGC
CACCCACCCATATATACTCATCCATTTATCTTTTGAACCTTGTGTGCAAAAAAATATTTG
GAAGGTCATTGCTGCGAACCATTATCCTATTCTCTTTTGGAAGGTTCCAAATATATTTCA
GCTTCCACTACTTGCACCCGTTTGTTTTTGCATTTTCAGCATCTTCATTTTCATCTGCAC
CAACATCATCACAATCTATGAAGCCTTCTTCATCATTAGTAGTTATTTTGTTGGCATCAT
TACATATCTCATTTTTGTTTTTTGGCCCCCTTTTCACACATTATGTGGCCGAGCAGTCAG
GACAGTCTACATAGAACCGGATCACATCTACCAACTGATAATGATCT

Homology of Contig U35_39174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None