barSeed - Barley Seed Development Database

Probe CUST_26974_PI390587928

Source Contig U35_41490

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26974_PI390587928	Hv_44K_v2	AGTTCGACATGACCCACGGCTTCAAGGCGACGACCGACTACATCCGACAGCCCATTCCCC	331	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56680.1	3138	2e-24	1943 - 2002	100	60 / 60	minus	ABC12286
MLOC	MLOC_56680.2	1649	2e-24	454 - 513	100	60 / 60	minus	ABC12286
JLOC1	JLOC1_36685.1	1195	8e-25	589 - 648	100	60 / 60	minus
Harvest35	U35_41490	483	3e-25	332 - 391	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_41490 483 Hv_44K_v2
CTTGTTCCCGTCCCGGCCACGGTCACGGTCTTCAAGGTGTCGGTGTCCGCCAGCCAGGGC
GCCGTGGACGTGATCAACAGGTGGCAAAAGGTGGCGCCGGCCCTGCCGGCCGAACTCTAC
ATCAGGGTGCTCCTCCGGAAGAACACGGCCGACTTCCGGTCCCTGTACCTCGGTAGCTGT
GACAAGCTCCTGCCGGTGATGAGCAGCCGCTTCCCGGAGCTGGGGATCAACCGCTCCGAC
TGCAAGGAGATGACCTGGGTCTGGTCGGTGGTCTACGTCTACCTCGGCAACGGCTCGACC
GTGGAGGACCTCCTGAACCGGACCACCTCCGAGTTCGACATGACCCACGGCTTCAAGGCG
ACGACCGACTACATCCGACAGCCCATTCCCCGGTTCGTGTGGGCCGACGTCTTCCCCAAG
CTCAACGACNCGAGCAAGGGGCAGATCATCCTGGTGCCCTACGGGGCGCGGATGGACAAT
GTG

Homology of Contig U35_41490 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35700.1	529	1e-56	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g38250.1	522	4e-57
Arabidopsis v10	None