barSeed - Barley Seed Development Database

Probe CUST_26943_PI390587928

Source Contig U35_15208

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26943_PI390587928	Hv_44K_v2	TCCGTTGAGCCACACTTTGCAGTAATAATTCAAGCTCTGAAAATCCTGAACTTGATTCAA	1101	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64156.11	3428	6e-24	2155 - 2213	100	59 / 59	minus	ABC02832 ABC02833 ABC08434
MLOC	MLOC_64156.12	1238	2e-23	1 - 58	100	58 / 58	minus	ABC02832 ABC02833
JLOC1	JLOC1_42088.1	1384	3e-24	1188 - 1246	100	59 / 59	plus
Harvest21	ABC02833	1167	1e-24	1089 - 1147	100	59 / 59	plus	ABC02833
Harvest35	U35_15208	1178	3e-25	1102 - 1161	100	60 / 60	plus

Contig Sequence (1178 bp)

>U35_15208 1178 Hv_44K_v2
GCCTCCCCCCCACCACCTATCCGCCGCCTCCCCCCATCCTCCACAAACCCACGCAGCTCC
AGCGGCGCAGGCGCATCCCAGCTCACCGGCGGAAATGGGCGGGCCAGGCCTCTACTCCGG
GATCGGCAAGAAGGCCAAGGATCTGCTCTACAGGGACTACCAGACCGACCACAAGTTCAC
CCTCACCACCTACACCGCCAATGGCGCCGCAATTACTGCTACCAGTACAAAGAAGGCTGA
TCTGATACTCGGTGAGATCCAATCACAGATCAAGAACAAGAACATCACCGTAGATGTGAA
GGCAAACTCGGCATCAAATGTCATTACAACAATTACCGCTGACGATCTTGCAGCGCCAGG
GCTGAAGACCATCTTGAGCTTTGCTGTTCCTGATCAGAAATCTGGAAAGGTGGAGCTCCA
GTACTTACATGATTATGCTGGTATTAATGCAAGCATTGGCTTGACTGCCAATCCTGTAGT
CAACCTCTCTGCTGCGTTTGGAACTAGTGCTCTAGCTGTTGGTGGTGATGTGTCGCTTGA
TACATCCACCAAGAATTTCACCAAATACAATGCTGCGTTTAGCTACACTAACCAAGATCT
TATCGCATCCCTGAACCTGAACAACAAGGGAGACAGCCTCACCGCATCCTATTACCACTT
TGTGGAGAAGTCCAGCACAGCTGTTGGGGCGGAGCTGACCCACAGCTTCTCGAGCAACGA
GAACAGCCTCACCTTCGGCACTCAGCATACCCTAGACCCGCTCACCCTCGTGAAGGCTCG
CATCAACAACTCTGGCAAGGCAAGCGCGCTGATCCAGCACGAGTTCAGGCCGAAGTCGCT
CTGCACCATCTCGGCGGAGGTGGACACCAAGGCCATCGAGAAGAGCTCGAAGGTCGGCAT
TGCGATTGCTCTCAAGCCTTGATGGCGAAATCAAGCCCTCTCTTTTCTGAACTCTCAGGG
GTGTTCCTCGGTTTCGGATGGAATCGTGGCGATTTGACAAATACTTCACACGCCTTGGGC
GCGTTGTCGCAGTCTGTTAGATTTGAAGAACTGCCGTGTTTCATTCCTGAGGAATTTTGT
CTTTGGTCGGTGTAGTGCCTGTCCGTTGAGCCACACTTTGCAGTAATAATTCAAGCTCTG
AAAATCCTGAACTTGATTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15208 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19734.3	275	7e-159	protein\|isochorismate synthase 1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g28660.2	277	4e-170
Arabidopsis v10	AT3G01280.1	276	6e-114	\| Symbols: VDAC1, ATVDAC1 \| voltage dependent anion channel 1 \| chr3:85754-87612 FORWARD LENGTH=276