barSeed - Barley Seed Development Database

Probe CUST_26942_PI390587928

Source Contig U35_15209

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26942_PI390587928	Hv_44K_v2	TGTAGTGCCTGTCCGTTGAGCCACACTTTGCAGTAATAATTCAAGCTCTGAAAATCCAAA	730	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64156.11	3428	7e-23	2168 - 2224	100	57 / 57	minus	ABC02832 ABC02833 ABC08434
MLOC	MLOC_64156.12	1238	7e-23	13 - 69	100	57 / 57	minus	ABC02832 ABC02833
JLOC1	JLOC1_42088.1	1384	4e-23	1177 - 1233	100	57 / 57	plus
Harvest21	ABC02832	730	3e-25	15 - 74	100	60 / 60	minus	ABC02832
Harvest21	ABC02833	1167	1e-23	1078 - 1134	100	57 / 57	plus	ABC02833
Harvest35	U35_15209	804	3e-25	731 - 790	100	60 / 60	plus
Harvest35	U35_15208	1178	1e-23	1091 - 1147	100	57 / 57	plus

Contig Sequence (804 bp)

>U35_15209 804 Hv_44K_v2
GATCTATGCAGCCGCCAGGGACTGAAGACCATCTTGAGCTTTGCTGTTCCTGATCAGAAA
TCTGGAAAGGTGGAGCTCCAGTACTTACATGATTATGCTGGTATTAATGCAAGCATTGGC
TTGACTGCCAATCCTGTAGTCAACCTCTCTGCTGCGTTTGGAACTAGTGCTCTAGCTGTT
GGTGGTGATGTGTCGCTTGATACATCCACCAAGAATTTCACCAAATACAATGCTGCGTTT
AGCTACACTAACCAAGATCTTATCGCATCCCTGAACCTGAACAACAAGGGAGACAGCCTC
ACCGCATCCTATTACCACTTTGTGGAGAAGTCCAGCACAGCTGTTGGGGCGGAGCTGACC
CACAGCTTCTCGAGCAACGAGAACAGCCTCACCTTCGGCACTCAGCATACCCTAGACCCG
CTCACCCTCGTGAAGGCTCGCATCAACAACTCTGGCAAGGCAAGCGCGCTGATCCAGCAC
GAGTTCAGGCCGAAGTCGCTCTGCACCATCTCGGCGGAGGTGGACACCAAGGCCATCGAG
AAGAGCTCGAAGGTCGGCATTGCGATTGCTCTCAAGCCTTGATGGCGAAATCAAGCCCTC
TCTTTTCTGAACTCTCAGGGGTGTTCCTCGGTTTCGGATGGAATTTCACACGCCTTGGGC
GCGTTGTCGCAGTCTGTTAGATTTGAAGAACTGCCGTGTTTCATTCCTGAGGAATTTTGT
CTTTGGTCGGTGTAGTGCCTGTCCGTTGAGCCACACTTTGCAGTAATAATTCAAGCTCTG
AAAATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19734.3	275	5e-105	protein\|isochorismate synthase 1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g28660.2	277	8e-114
Arabidopsis v10	AT3G01280.1	276	8e-80	\| Symbols: VDAC1, ATVDAC1 \| voltage dependent anion channel 1 \| chr3:85754-87612 FORWARD LENGTH=276