barSeed - Barley Seed Development Database

Probe CUST_26913_PI390587928

Source Contig U35_17590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26913_PI390587928	Hv_44K_v2	GTTTGTATGGGTTTTCGGAATAAACAAACATGCATGCATGGATGGAGGGGTTTGTATGGG	600	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252107.1	1750	2e-24	1653 - 1712	100	60 / 60	plus	ABC11709 ABC22849
MLOC	MLOC_65245.1	1988	2e-24	42 - 101	100	60 / 60	minus	ABC11709 ABC22849
JLOC1	JLOC1_42922.1	2005	8e-25	1888 - 1947	100	60 / 60	plus
Harvest21	ABC22849	328	3e-25	25 - 84	100	60 / 60	minus	ABC22849
Harvest35	U35_17590	751	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (751 bp)

>U35_17590 751 Hv_44K_v2
GACGACGATGCCGCCATGCAGCTCCCTGCCGAGTTCCTGCAGGCCACCAAGGGCAGGTGC
CTCCTGACGAGCTGGTGCGACCAGGAGGCGGTGCTGCAGCACCCGGCCCTCGGCGTCTTC
CTCACGCACTGCGGCTGGAACTCCGCCTTGGTGGCCATCAGCGCCGGGGTGCCCATGCTG
GGCTGGCCCTTCTTCGCCGAGCAGCAGACCAACTGCCGCTACGCGTCCGTCGAGTGGGGC
GTCGGGATGGAGGTCGGCGACAACGTGCGCCGCCAAGTGGTAGAGGCGAGGATAAGGGAG
GCCATGGGAGGCGACGGAGGGAACAAGTTGAAGCGCAAGGCAGCCGAGTGGAAGGAGATC
TGTGCCCGTGCTGCTCCTGCCAGATCCATGGCCAACCTTCACAGCCTCGTCAAGGATGTA
CTCATGCAACCTCCCCCCAAGACTCTAGATTCATCATCATCATCATGCTTGGAATATGAA
TGGAATGTTCCAGCCCACCTCCTCTAGCTTATTCGCCATGTTTTAGGAATAAGAAAACAT
GCTACCACTCTTGCTCTTGCTAGGTTCATAACATGCATGAAATATGCGGGGCCTTAATTG
GTTTGTATGGGTTTTCGGAATAAACAAACATGCATGCATGGATGGAGGGGTTTGTATGGG
TTTTTTAAAAAAAAAAAAAATGCATGGATGGATGGACGAAGCACGCAGCCGTATTATTAA
GCAAATAATTAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_17590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36840.1	494	6e-58	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g46855.1	487	8e-60
Arabidopsis v10	None