barSeed - Barley Seed Development Database

Probe CUST_26879_PI390587928

Source Contig U35_31897

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26879_PI390587928	Hv_44K_v2	TCTAGCTAGTCAGCGTAGCAACAGGATATCCACAGTTGCACACGGCACGCACACACTCGG	42	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366435	1250	2e-24	17 - 76	100	60 / 60	plus	ABC01871 ABC06515
MLOC	MLOC_45337.1	551	2e-24	190 - 249	100	60 / 60	minus	None
JLOC1	JLOC1_29435.1	293	8e-25	190 - 249	100	60 / 60	minus
Harvest21	ABC39236	676	3e-25	4 - 63	100	60 / 60	plus
Harvest35	U35_31897	394	3e-25	43 - 102	100	60 / 60	plus
Harvest35	U35_13858	1248	3e-25	21 - 80	100	60 / 60	plus

Contig Sequence (394 bp)

>U35_31897 394 Hv_44K_v2
TCGAGCACTGTTGGCCTATTGGAAGGCAACACACACGCACGCTCTAGCTAGTCAGCGTAG
CAACAGGATATCCACAGTTGCACACGGCACGCACACACTCGGGCGCGAGCGAGTCGGGCA
TGGCTGCTGCAAGAGCAAGTGCTCTGTGCGTCGTCCTGCTAGCCGTCATGGCGGCCGGCG
GGGCGTCGGCGCAGCTGTCCACGGGGTTCTACTCGAGCTCGTGCCCGGGCGCGCTGGGCG
CAGTCGCGTCGGTGGTGCAGTCGGCCGTGGCGAACGAGCCGCGCATGGGCGCATCCATCC
TCCGCCTCTTCTTCCACGACTGCTTCGTCCAGGGCTGCGACGGGTCGCTGCTCCTGGACG
ACACTGCGAGCTTTCAGGGAGAGAAGATGGCGAC

Homology of Contig U35_31897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None