barSeed - Barley Seed Development Database

Probe CUST_26858_PI390587928

Source Contig U35_29591

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26858_PI390587928	Hv_44K_v2	GCTTCTGGTGATGCTACTGTTGACCATGTCACCGAGGATAAAAAGCCCATGAAGAAAAAA	132	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.393	1.401	1.089	0.696	0.339	0.301
Raw	6296.480	9528.977	6611.010	6234.857	1143.011	1105.064

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75016.4	3324	7e-23	1294 - 1354	98	60 / 61	minus	ABC12137 ABC28939
MLOC	MLOC_75016.2	4083	7e-23	1327 - 1387	98	60 / 61	minus	ABC12137 ABC28939
MLOC	MLOC_75016.3	4309	7e-23	1301 - 1361	98	60 / 61	minus	ABC12137 ABC28939
MLOC	MLOC_75016.5	3070	7e-23	804 - 864	98	60 / 61	minus	ABC28939
MLOC	MLOC_75016.1	3979	7e-23	1327 - 1387	98	60 / 61	minus	ABC12137 ABC28939
JLOC1	JLOC1_50018.1	921	4e-23	555 - 615	98	60 / 61	minus
JLOC1	JLOC1_50019.6	2755	4e-23	1360 - 1420	98	60 / 61	plus
JLOC1	JLOC1_50019.5	4013	4e-23	2616 - 2676	98	60 / 61	plus
JLOC1	JLOC1_50019.4	3166	4e-23	1769 - 1829	98	60 / 61	plus
JLOC1	JLOC1_50019.3	3932	4e-23	2535 - 2595	98	60 / 61	plus
JLOC1	JLOC1_50019.2	4032	4e-23	2637 - 2697	98	60 / 61	plus
JLOC1	JLOC1_50019.1	4011	4e-23	2616 - 2676	98	60 / 61	plus
Harvest21	ABC28939	198	3e-25	133 - 192	100	60 / 60	plus	ABC28939
Harvest35	U35_29591	198	3e-25	133 - 192	100	60 / 60	plus

Contig Sequence (198 bp)

>U35_29591 198 Hv_44K_v2
ATTGAGAAAATTGATGCTGATATGGAAGAGCAGGTCAAAGATAGAGATGTCAATCTTGCT
GGTGATGGTGGCAAGAATCCTGACAATGTTGGGGAGCAAGTTGAGAAGACAGTGAGGGTT
GTTGAAGGAAACGCTTCTGGTGATGCTACTGTTGACCATGTCACCGAGGATAAAAAGCCC
ATGAAGAAAAAAAAAAAA

Homology of Contig U35_29591 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None