barSeed - Barley Seed Development Database

Probe CUST_2683_PI390587928

Source Contig U35_14234

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2683_PI390587928	Hv_44K_v2	GGGCAGAATGTTTTTTCTTTCAAGTTTCTTGTATGCAAAGCTGCAAAACAAATTCAACTG	702	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4684.1	2710	2e-24	290 - 349	100	60 / 60	minus	ABC01797 ABC01800 ABC01805 ABC18558
JLOC1	JLOC1_2949.1	2676	8e-25	256 - 315	100	60 / 60	minus
Harvest21	ABC18558	794	3e-25	673 - 732	100	60 / 60	plus	ABC18558
Harvest35	U35_14234	812	3e-25	703 - 762	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_14234 812 Hv_44K_v2
CGACTTTCTTGGTTGCCCTCTGCCAAGCTATTGACCTACGCCACATCGAGGAGAATGTCA
AGAGCGCAGTCAAGAGCTGTGTGATGACGGTGGCAAAAAAGACACTAAGCACCAATTCCA
CCGGTGGCCTTCACGTTGCGCGCTTCTGCGAGAAAGACCTGCTCCAGGAGATTGAGCGCG
AGGCAGTGTTTGCCTACGCCGACGACCCTTGCAGCCCTAACTATCCACTCATGAAGAAGC
TACGTGGTGTGCTTGTGGAGCGCGCCCTCTCCAATGGCATGGCCGAGTTTGATGCGGAGA
CTTCCGTGTTGGCAAAGGTTGCCTTATTTGAGGAGGAGCTACGCAAGACGCTGCCCCGGG
CGGTCGAGGCTGCACGCGCTGCCGTAGAGAGCGGCACAGCTGAAATGCCCAACAGAATCA
CCGAGTGTCGCTCGTACCCTCTCTACCGGTTTGTGCGTGAGGAGCTCGGAACTGTATACC
TAACCGGAGAGAAGACACGATCACCCGGCGAGGAGCTCAACAAGGTGCTCGTGGCCATTA
ACCAAGGCAAGCACATCGATGCACTGCTTGAGTGCCTCAAGGAGTGGAACGGCGAACCCC
TGCCCATCTGCTAAACTCAGAACATACAAGCAGAAGATGGGAGGACGCAGAGAAGGTGGT
TTCTCAGATTTCCGAGACAAGTGAATAATACTATATTTAGCGGGGCAGAATGTTTTTTCT
TTCAAGTTTCTTGTATGCAAAGCTGCAAAACAAATTCAACTGTAACTTATTGAAGTATCA
CGAATTATATTACATGATAAAAAAAAAAAAAA

Homology of Contig U35_14234 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35290.1	717	7e-114	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi3g49280.1	713	9e-117
Arabidopsis v10	AT3G53260.1	717	2e-78	\| Symbols: PAL2, ATPAL2 \| phenylalanine ammonia-lyase 2 \| chr3:19744256-19746619 REVERSE LENGTH=717