barSeed - Barley Seed Development Database

Probe CUST_26839_PI390587928

Source Contig U35_43899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26839_PI390587928	Hv_44K_v2	ATAGAATTAGTGAATACTTCAGTAGAGGACATTTTTGGTACAGATGAACAAGCTCTACGC	389	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364603	2174	7e-23	2020 - 2079	98	59 / 60	plus	ABC17787
MLOC	MLOC_14307.5	1893	7e-23	1799 - 1858	98	59 / 60	plus	None
MLOC	MLOC_14307.4	1971	3e-22	1913 - 1971	98	58 / 59	plus	ABC17787
MLOC	MLOC_14307.3	1807	3e-22	1749 - 1807	98	58 / 59	plus	ABC17787
JLOC1	JLOC1_9766.2	2058	4e-23	1772 - 1831	98	59 / 60	plus
JLOC1	JLOC1_9766.1	2041	4e-23	1755 - 1814	98	59 / 60	plus
Harvest21	ABC41165	449	3e-25	390 - 449	100	60 / 60	plus
Harvest35	U35_43899	449	3e-25	390 - 449	100	60 / 60	plus

Contig Sequence (449 bp)

>U35_43899 449 Hv_44K_v2
CAGAGAAAACAATTGAAGGCACGGCAGCAGGCATAACTTCTGTATTGGCAGCCTGCTCAA
TCTTGGTGACACTCTTGGCTTCAAGCGGATACATTCTTTCACAGCACTGGTTGTCACTTT
CATTAGCTGTGACTTTGAGCTTATTACTGGAGGCATATACCACACAGCTGGATAACGCTT
TCATACCCCTTGTGTTCTATAGCCTTCTATGTCTATAAATGAAGAGCAACCTGTTGACAT
CCAACTGACCTTGAGGTCCTCTTTTTGGTTACTGCTAATATATATAGTACAGCAAGGCAA
TAGCTAGTCATTTGTTCTCTTTGCCTCCTTGGTGCTCCTTTGTACCACCTCTGATTATAA
GTGTAGTCCTAGGTTTAAGAATATAAGAAATAGAATTAGTGAATACTTCAGTAGAGGACA
TTTTTGGTACAGATGAACAAGCTCTACGC

Homology of Contig U35_43899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None