barSeed - Barley Seed Development Database

Probe CUST_26836_PI390587928

Source Contig U35_2803

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26836_PI390587928	Hv_44K_v2	GTCCCCCAGCAATTGTTAGTTTGCTCCCTTCGTTTCAAAAATAACTTAAGTTCTGCTAAA	935	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74291.4	1377	2e-23	1275 - 1332	100	58 / 58	plus	ABC06921
MLOC	MLOC_74291.2	1092	2e-23	1026 - 1083	100	58 / 58	plus	ABC06326 ABC06921
JLOC1	JLOC1_49505.2	1720	1e-23	1615 - 1672	100	58 / 58	plus
JLOC1	JLOC1_49505.1	1132	1e-23	1027 - 1084	100	58 / 58	plus
Harvest21	ABC06922	1039	3e-25	966 - 1025	100	60 / 60	plus
Harvest21	ABC06921	1134	4e-24	976 - 1033	100	58 / 58	plus	ABC06921
Harvest35	U35_2803	1009	3e-25	936 - 995	100	60 / 60	plus
Harvest35	U35_2802	1110	4e-24	952 - 1009	100	58 / 58	plus

Contig Sequence (1009 bp)

>U35_2803 1009 Hv_44K_v2
GGGCCCTAATCCGGCGTCGAATCCGATGGCGGCCAGCGCCGGCAGCAAGATCCGCAACGC
CAAGCTGGTTCTTCTCGGCGATGTGGGTGCTGGGAAATCCAGCCTGGTGCTTCGGTTCGT
AAAAGGACAATTTGTTGAGTTCCAGGAATCGACAATTGGAGCGGCTTTCTTCTCTCAAAC
ACTGGCTGTTAATGACGAGACTGTGAAGTTTGAAATCTGGGATACTGCTGGGCAGGAGAG
GTATCATAGCTTGGCCCCCATGTACTATAGGGGTGCTGCCGCAGCCATAGTTGTCTATGA
CATCTCGAACCAGGCATCCTTCACCCGAGCAAAGAAATGGGTTCAAGAACTTCAAGCTCA
AGGAAACCAGAATACAGTAGTGGCTCTTGCTGGCAACAAAGCTGATTTGCTAGAGGCGAG
GGAGGTTCAAATAGAGGAAGCCAAGACATATGCGCAGGAGAATGGCCTCTTCTTCATGGA
AACGTCTGCCAAGACTGCAACCAATGTGAATGACATATTTTATGAGATTGCGAAGAGACT
GCTGCAAGGGCAGGCGGCGCAGAACCCACAGGCGGCGGGGATGGTTCTCTCCCAGAGACC
CAACGAGAGAGTGGTCAGCGCGGCTTCGTGCTGCTCCTGAAGCACAAGTTTTGGCCGCAT
TTGCCGTCTGTATGAAATTTAGGAGAGGGATTTCGGCAAGCATTTGTCGTGCGGCTTCGT
GCCGCTCTTGATCTTGTGGCTGCCTTCCTGGCTGATCTGATATACTCTAGCACCACCGCG
CCTGCCTGACACTTTACTTTTCCGTTCGTGCGTTTGTCGTGTAAATGCCCACACTGGAAT
GCCCCTGCAGATATCGCAATTCGCAAGTGAGAGTTACCTGCAAAAAAAATGATTTTGTCT
TGCTTTGCTCCCCAAGTTTGATGTTCAGGGAGTATGTCCCCCAGCAATTGTTAGTTTGCT
CCCTTCGTTTCAAAAATAACTTAAGTTCTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2803 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46390.1	204	8e-110	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g12890.1	204	5e-110
Arabidopsis v10	AT5G45130.1	200	3e-95	\| Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A \| RAB homolog 1 \| chr5:18244495-18246060 FORWARD LENGTH=200