barSeed - Barley Seed Development Database

Probe CUST_26764_PI390587928

Source Contig U35_44990

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26764_PI390587928	Hv_44K_v2	CAATGTATAGCATCATTGGTGCACATGATCTTTAGATCAAAGTTATGCTGGTACTATGTA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34513.1	2231	7e-23	41 - 100	98	59 / 60	minus	ABC17102 ABC26328
MLOC	MLOC_34513.2	1863	7e-23	12 - 71	98	59 / 60	minus	ABC17102 ABC26328
JLOC1	JLOC1_22265.1	2085	4e-23	1992 - 2051	98	59 / 60	plus
Harvest21	ABC26328	1060	3e-25	985 - 1044	100	60 / 60	plus	ABC26328
Harvest35	U35_44990	560	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (560 bp)

>U35_44990 560 Hv_44K_v2
TTTTTTTTTTTTTTTTTACATAGTACCAGCATAACTTTGATCTAAAGATCATGTGCACCA
ATGATGCTATACATTGATCTAAAGACTAGTTGCAGCAATGTGTTCGATCACGAGACATTT
GCAAAACAAATGCATTAGTTCAATCGGCTTATTCCAAGACTAGCTAGCAAGTTCTTGATG
TGAGCTGTAATCGAGCTACGTCCCTGGATCATACTCTCCGTGCTGAGTTCCCTGGATCAT
ACTCTCCCTGTTTAGTTCCCTTCATGCACGTCCTCCATCTTACTCTGTCCCTGCTTCTTC
TCTTTGAGGAACTCCGTGAGACCCCGGAGCGCAACGTCTGGCTCATTGGTCCTCAACAGC
ATCTCGGACACCTCCGCCGGGGTCACCTGCACCGCCATAAGCAGTTCCTGTATCTCCGGG
AAGAGGGAGGTGGTCGTCGACGAGGAAGTAGTTCCGGGCCAGAGTCTTGAATGCCTCCCA
GCAGCAGTAGCCCATGTAGACGTGCATGTCCATGCGCCCCGGCCGCAGCAGCGCCGGGTC
AAGGCGGTCCTTGTAGTTGG

Homology of Contig U35_44990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None