barSeed - Barley Seed Development Database

Probe CUST_26746_PI390587928

Source Contig U35_41015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26746_PI390587928	Hv_44K_v2	ATGCCATTGATCAGTTCTAAACATCTTGTGTTCCATGTGCATCGACTGCCTTGCATTAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61063.1	2471	6e-24	2322 - 2380	100	59 / 59	plus	ABC05663 ABC30485
MLOC	MLOC_61063.2	2173	6e-24	2024 - 2082	100	59 / 59	plus	ABC05663 ABC30485
JLOC1	JLOC1_39865.2	2082	3e-24	1837 - 1895	100	59 / 59	plus
JLOC1	JLOC1_39865.1	2156	3e-24	1911 - 1969	100	59 / 59	plus
Harvest35	U35_41015	741	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (741 bp)

>U35_41015 741 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATGCAAGGCAGTCGATGCACATGGAACACAAGATGTTTAGAA
CTGATCAATGGCATAAATAGTGAACAGCACGACATCACACCCCTCTGTACCACCTAAATG
GAATCATCTAAAATTAATACCCGACAGATCACCCAAACATATTGAATACAGTCGAATTCA
ATGGCAAGATTTGCGCGCTTCCTGTTTCGGGTGACAATGCTGAAAAGGCAAAATTATTCA
GCAACCTTGGACACCTTGGGAACCTCCACCGGGAATGTGTCGATCTCGTCCATCCAGGGG
TTGTTCTGCTCCTTCGCTGGGTTCACTGACCTCAGTGCCTTCCAGACGGCGCTGTTACAC
TTGAACCCCGAGCCGAACGCTATCTGCCATATCCTGTCACGCCTCCTGATCCTCCCCTTT
GCCTCGCTGTAGGCCAGCTCGTACCACAGCGAGCTGCTGGACGTGTTGCCGAAACGGAAG
AGAGTCATCCGAGACGGCTCCATGTGCCAATCGGTGAGGTCCATGTTCTTCTCTATCTCA
TCAAGCACAGCGCGCCCACCAGCGTGGATGCAAAAGTGCTCGAATGCCAGCTTGAAGTCA
GGAATGTATGGCTTGATCTTCATCTTGAACAGCTTCTTGCCAACCAATGTGACCATGAAC
AGCAGCTGCTCCGAGAATGGCAACACAAGCGGCCCAAGCGTTGTGATGTTCGTCTTGAGC
GCATCCCCAGCCACCGCCATG

Homology of Contig U35_41015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g39750.2	520	1e-102	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi3g07730.1	520	8e-110
Arabidopsis v10	AT2G26640.1	509	8e-99	\| Symbols: KCS11 \| 3-ketoacyl-CoA synthase 11 \| chr2:11330094-11331623 FORWARD LENGTH=509