barSeed - Barley Seed Development Database

Probe CUST_26709_PI390587928

Source Contig U35_41054

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26709_PI390587928	Hv_44K_v2	ATTCGTCGAGAAGATCCTATCTTCCGCGGGCCTTTGCAGCGTGACAACCAGCGACGTGTT	120	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364175	3392	2e-24	2570 - 2629	100	60 / 60	plus	ABC03031 ABC22235
MLOC	AK370334	2412	2e-24	1587 - 1646	100	60 / 60	plus	ABC22235
MLOC	MLOC_64767.1	3610	2e-24	828 - 887	100	60 / 60	minus	ABC22235
MLOC	MLOC_64767.2	3163	2e-24	828 - 887	100	60 / 60	minus	ABC22235
MLOC	MLOC_64767.3	3120	2e-24	783 - 842	100	60 / 60	minus	ABC22235
MLOC	MLOC_64767.4	3731	2e-24	763 - 822	100	60 / 60	minus	ABC22235
JLOC1	JLOC1_42558.4	3213	8e-25	2296 - 2355	100	60 / 60	plus
JLOC1	JLOC1_42558.3	3052	8e-25	2135 - 2194	100	60 / 60	plus
JLOC1	JLOC1_42558.2	3219	8e-25	2302 - 2361	100	60 / 60	plus
JLOC1	JLOC1_42558.1	3578	8e-25	2661 - 2720	100	60 / 60	plus
Harvest35	U35_41054	393	3e-25	121 - 180	100	60 / 60	plus

Contig Sequence (393 bp)

>U35_41054 393 Hv_44K_v2
ATCAAGATGTCTTCCGATCGGATCGGTCGCGCGGACGTTATCATGGGACGATTCCTCCTC
CGAAGAGGCCGCGCCGTGCTCTAGCAAAGAAGAAGACTCCCACGAGCAAGAGCAGTACGA
ATTCGTCGAGAAGATCCTATCTTCCGCGGGCCTTTGCAGCGTGACAACCAGCGACGTGTT
CGCCCGGTGGCATTCGCTCGATAGCCCTCTGGCGCCGAACGTGCCTGACCAGTTCCTGGA
GCGCAAGGTGGAGGACGCCAAGCGCAGAGAGCGGCGGTCGGGCCAGAGGCTCCTCATCGA
CTCCGTGAACGCCGCGCTCCTAGACATCGGCCAGAGCACGCTCTGGAGCGCGTACCCTTG
CGCCGGGCCGGTTGCCAACGTGTCGCGGCGGGA

Homology of Contig U35_41054 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04990.1	902	1e-52	protein\|expressed protein
Brachypodium v1_2	Bradi1g75500.1	886	6e-56
Arabidopsis v10	None