barSeed - Barley Seed Development Database

Probe CUST_26684_PI390587928

Source Contig U35_24220

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26684_PI390587928	Hv_44K_v2	ATCTGAAAAGTGACACCTTTATTCCAGATACTGTCCTAGATGACCGTCGGCTATGGTCGA	839	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57254.8	1958	2e-24	899 - 958	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
MLOC	MLOC_57254.5	1522	2e-24	1328 - 1387	100	60 / 60	plus	ABC07811
MLOC	MLOC_57254.6	1522	2e-24	1328 - 1387	100	60 / 60	plus	ABC07811
MLOC	MLOC_57254.9	1958	2e-24	772 - 831	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
MLOC	MLOC_57254.1	3652	2e-24	2490 - 2549	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
MLOC	MLOC_57254.7	2663	2e-24	1495 - 1554	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
MLOC	MLOC_57254.3	3179	2e-24	2070 - 2129	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
MLOC	MLOC_57254.2	3769	2e-24	2659 - 2718	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
MLOC	MLOC_57254.4	3491	2e-24	2305 - 2364	100	60 / 60	plus	ABC07811 ABC09965 ABC43005 ABC47240
JLOC1	JLOC1_37075.1	2158	8e-25	940 - 999	100	60 / 60	plus
Harvest21	ABC47239	585	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_24220	909	3e-25	840 - 899	100	60 / 60	plus

Contig Sequence (909 bp)

>U35_24220 909 Hv_44K_v2
CTGGGCCTTGTTCCTCCTCCTTGCTCTCTTCTCCTCTAGCCTCCTCGTCTGCAGCAGCAA
TGGGGAGAGGGTCTTCCTCTACCCGCAGTCTCAGAAGGTCTCCTCCATCGTCAGCCAGCG
GTACAGGACCGCCTACCACTTCCAGCCCCCCAAGAACTGGATCAACGATCCAAATGGGCC
AATGTACTACAACGGCATCTACCATGAGTTCTACCAGTACAACCCCAATGGCTCCGTGTG
GGGTAACATAGTTTGGGGCCATTCGGTTTCTACAGATCTCATCAACTGGATCCCACTTGA
AACCGCAATAGAACGGGACACCCCGAGCGACATAAACGGTTGCTGGACCGGCTCGGCCAC
AATTCTCCCCGGTAACCGACTGGTCATCATATACACCGGTGCCGACCCGGAGAAGCGTCA
GGTCCAGAACATTGTGGTTCCGAAAAACCTGACTGATCCGTACCTGAGAGAATGGACCAA
AGCCGTAAATAACCCGGTGATCCAACCGGTCGGACCGGGCTTGAACTCGGGTCAGTTCAG
GGATCCGACAACCGGTTGGATCGGACCTGATGGACTGTGGAGGATAGCAGTTGGTGCTGA
GCTCAACGGCGACAGTGCTGCACTTTTGTACAAGAGCAAAGACTTTCTGAACTGGACTAG
AGTTGACCACCCACTGTATTCATCCAATTCCTCCTCTATGTGGGAGTGCCCGGATTTCTT
CGCGGTATTGCCGGGCAATAGCGGAGGACTGGACCTGTCTACAGCGATCCCGAATGGCGC
CAAGCATGTCCTCAAAATGAGTCTGGATTCCTGTGACAAGTACATGATTGGGGTTTATGA
TCTGAAAAGTGACACCTTTATTCCAGATACTGTCCTAGATGACCGTCGGCTATGGTCGAG
GATCGATTA

Homology of Contig U35_24220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73580.1	513	3e-158	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi2g61830.1	582	0.0
Arabidopsis v10	AT3G13790.1	584	3e-102	\| Symbols: ATCWINV1, ATBFRUCT1 \| Glycosyl hydrolases family 32 protein \| chr3:4533084-4535831 REVERSE LENGTH=584