barSeed - Barley Seed Development Database

Probe CUST_26681_PI390587928

Source Contig U35_24223

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26681_PI390587928	Hv_44K_v2	CTTCAGGAACTCTCGTTTTTGCCTTTTAACTTACAGAATTGCTAAACAAAGCAAACATGT	628	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25341.2	1697	2e-24	211 - 270	100	60 / 60	plus	ABC23356
MLOC	AK358508	1345	7e-23	674 - 733	98	59 / 60	minus	ABC33339
MLOC	MLOC_66854.1	176	7e-23	61 - 120	98	59 / 60	plus	None
MLOC	MLOC_66855.3	1758	7e-23	938 - 997	98	59 / 60	plus	ABC33339
JLOC1	JLOC1_44101.1	1722	4e-23	707 - 766	98	59 / 60	minus
Harvest21	ABC19366	692	3e-25	629 - 688	100	60 / 60	plus
Harvest35	U35_24223	693	3e-25	629 - 688	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_24223 693 Hv_44K_v2
AACACATACCGTGCACTCAGGGTCATACCATATGTTCCTCTTGCCATGACAAGCTCCCAG
ACACAGATAAAACACAGGTGGAGAGGGGCATAGACCTGGTCGCGACCTCCGCAGGTGGAG
AGGGACTGCGGTGGCTGACTGACTGACGCGCCAGCGGTGAAGGTGTTCGTGGTGGGGCAC
GACTGGGGCGCCATCATGTCGTGGAACCTCTGCCTGCTGCGGCCGGATCGGGTGCGCGCG
CTCGTCAACCTCAGCGTGCCCTTCATGCCCCGCCACCCCTCGGCAAAGCCCCTCCACTAC
TTCCGCCGCGCCTACGGGGACGACTACTATGTCTGCAAATTCCAGATGATGGCTTGTCGT
TCTCCTCATACAAAGAAACAAGGGCTGGACATCATAGAAAGTAGACATAAGTAGCCAGCG
CGTGACCACAATTTATGGAGATATACTTTGCCAAACCTTTCGTGAGAGTATCGAGCACAC
CGTTGGACTCAAGGTACTTCCTGAAACCTTCTTTCTTGGCTTCTCTATCCTAAAAAGACC
ATAACACTATGATTCATAACCATTATTTGGGAAACAAATTACATGATAAGTATGTTGTAC
CTTTTTTTTTGCAAGGAATAGGTTGTACCTTCAGGAACTCTCGTTTTTGCCTTTTAACTT
ACAGAATTGCTAAACAAAGCAAACATGTGAAAT

Homology of Contig U35_24223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None