barSeed - Barley Seed Development Database

Probe CUST_26660_PI390587928

Source Contig U35_12258

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26660_PI390587928	Hv_44K_v2	TCGACAGTTATGCACTAGGCTTGAATCCAAAATATATAGCAGAAACGTCAATCACTTGCT	578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36476.2	7879	2e-24	1182 - 1241	100	60 / 60	minus	ABC08802
MLOC	MLOC_36476.3	7874	2e-24	1182 - 1241	100	60 / 60	minus	ABC08802
MLOC	MLOC_36476.1	7879	2e-24	1259 - 1318	100	60 / 60	minus	ABC08802
Harvest21	ABC32417	639	3e-25	580 - 639	100	60 / 60	plus
Harvest35	U35_12258	638	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_12258 638 Hv_44K_v2
GCGCGACCTTTCCCTGCATTTCTGCAAGAGGCTTGTAGGTATCCAAAGTTTACTCCCGCC
AAGTTGCAAATGTACTTTGTCAGTGGACATCTGAAGAAATAATCTTCAATACTCCATTTG
GTTGTCCGCAGTAGGGCATCCTTTTATGCCATTGTTTTATCCAGCTACCCTCATCAGATT
ATTGCGTTGTGTTCTAGCTGATCATGTTGATGATGATGTTTGAGCTGATCATGTTGTTTG
GTGTTTCACAGGGCGGAGGCGGACTGTGGCAGTGTTTCTTCGGTTGTACACAAGCTTGTC
ATCAATTGCTATTGCATTCTCTGTGACGTGCATTATTCGTTCAGACTTGTTCGTGAAGGT
TTGAACTTTGGACTATGTAATTTAGTACCTAAATATTTTTGCAATTAGTATATGTGAAGT
TGTATCTCATGTAAGGCTCTGCTTCTTTGGCATGCTTAAGTACCTCTAAACCCATGCGTT
CAATCTTCTTCAACTTAATTGAGATAGCAACCTGCCTTGTCTAGACTGTTACTACTTGTA
GTTTGTAGGCCCTGAATTTGCTTTCTAGTTCCACGTAATCGACAGTTATGCACTAGGCTT
GAATCCAAAATATATAGCAGAAACGTCAATCACTTGCT

Homology of Contig U35_12258 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None