- Probe CUST_2655_PI390587928
- Source Contig U35_39051
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_2655_PI390587928 | Hv_44K_v2 | AACTCGAAGATCCAGATCAACGAGGAGTACGCGCGCAAATACGAGCACAACAAGCGGCGC | 157 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_12066.3 | 5493 | 2e-24 | 5263 - 5322 | 100 | 60 / 60 | minus | ABC21293 |
MLOC | MLOC_12066.7 | 4483 | 2e-24 | 4197 - 4256 | 100 | 60 / 60 | minus | ABC21293 |
MLOC | MLOC_12066.8 | 3664 | 2e-24 | 2573 - 2632 | 100 | 60 / 60 | minus | ABC00132 ABC00420 ABC00705 ABC00870 ABC21293 ABC29897 |
JLOC1 | JLOC1_8065.1 | 1308 | 8e-25 | 127 - 186 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_8062.1 | 3597 | 8e-25 | 2427 - 2486 | 100 | 60 / 60 | minus | |
Harvest35 | U35_39051 | 456 | 3e-25 | 158 - 217 | 100 | 60 / 60 | plus |
Contig Sequence (456 bp)
>U35_39051 456 Hv_44K_v2 CAACTCTCCAGTCGCAAAAACCCTAGCACGAGCTGCGCCGCCGCCGCCACACGCCGCAGC AGCAGTCAAGCCGTCGCCGGAGGAGATGAGGGGGAAGGGGAAGGCGCTGGACATCCTCGC GGGCTCCGACGACGACTCGGATGTCCCCGCCGAGGACAACTCGAAGATCCAGATCAACGA GGAGTACGCGCGCAAATACGAGCACAACAAGCGGCGCGAGGCGCTGCATCGCCTCGAGGA GCAGAAGAAGAAGGGCCTCGTCGCCGACCCCGACGACGACGACGACGACGAGTCGGATGA GGACGAGGCCGTCGCCGCAGCCTCCCGCCGCGTCGACCGCCGCGTGCTCCAGGTCATCCG CCGCATCCGCACCGGCGACAGCGCCATCTTCGACAAAGACGCCAAGGTGTACTCGTCCTC GTCGGACGACGAGGACCACGACTCCGAGGGGGAGCC
Homology of Contig U35_39051 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |