barSeed - Barley Seed Development Database

Probe CUST_2655_PI390587928

Source Contig U35_39051

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2655_PI390587928	Hv_44K_v2	AACTCGAAGATCCAGATCAACGAGGAGTACGCGCGCAAATACGAGCACAACAAGCGGCGC	157	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12066.3	5493	2e-24	5263 - 5322	100	60 / 60	minus	ABC21293
MLOC	MLOC_12066.7	4483	2e-24	4197 - 4256	100	60 / 60	minus	ABC21293
MLOC	MLOC_12066.8	3664	2e-24	2573 - 2632	100	60 / 60	minus	ABC00132 ABC00420 ABC00705 ABC00870 ABC21293 ABC29897
JLOC1	JLOC1_8065.1	1308	8e-25	127 - 186	100	60 / 60	plus
JLOC1	JLOC1_8062.1	3597	8e-25	2427 - 2486	100	60 / 60	minus
Harvest35	U35_39051	456	3e-25	158 - 217	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_39051 456 Hv_44K_v2
CAACTCTCCAGTCGCAAAAACCCTAGCACGAGCTGCGCCGCCGCCGCCACACGCCGCAGC
AGCAGTCAAGCCGTCGCCGGAGGAGATGAGGGGGAAGGGGAAGGCGCTGGACATCCTCGC
GGGCTCCGACGACGACTCGGATGTCCCCGCCGAGGACAACTCGAAGATCCAGATCAACGA
GGAGTACGCGCGCAAATACGAGCACAACAAGCGGCGCGAGGCGCTGCATCGCCTCGAGGA
GCAGAAGAAGAAGGGCCTCGTCGCCGACCCCGACGACGACGACGACGACGAGTCGGATGA
GGACGAGGCCGTCGCCGCAGCCTCCCGCCGCGTCGACCGCCGCGTGCTCCAGGTCATCCG
CCGCATCCGCACCGGCGACAGCGCCATCTTCGACAAAGACGCCAAGGTGTACTCGTCCTC
GTCGGACGACGAGGACCACGACTCCGAGGGGGAGCC

Homology of Contig U35_39051 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None