barSeed - Barley Seed Development Database

Probe CUST_26523_PI390587928

Source Contig U35_156

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26523_PI390587928	Hv_44K_v2	TGGCTTTGCATGGTGTTTGCCTGCTGTATGAAATAATGAAATGGAACATATGTGTATTCC	1435	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248710.1	1530	2e-24	1441 - 1500	100	60 / 60	plus	ABC01393 ABC05177 ABC37901
MLOC	MLOC_56003.4	1844	2e-24	1667 - 1726	100	60 / 60	plus	ABC05177 ABC37901
MLOC	MLOC_56003.3	1637	2e-24	1546 - 1605	100	60 / 60	plus	ABC01393 ABC05177 ABC37901
MLOC	MLOC_56003.2	1550	2e-24	1466 - 1525	100	60 / 60	plus	ABC01393 ABC05177 ABC37901
JLOC1	JLOC1_36182.2	1642	8e-25	1465 - 1524	100	60 / 60	plus
JLOC1	JLOC1_36182.1	1740	8e-25	1563 - 1622	100	60 / 60	plus
Harvest21	ABC05178	1516	3e-25	1436 - 1495	100	60 / 60	plus
Harvest21	ABC05177	641	3e-25	18 - 77	100	60 / 60	minus	ABC05177
Harvest35	U35_156	1544	3e-25	1436 - 1495	100	60 / 60	plus

Contig Sequence (1544 bp)

>U35_156 1544 Hv_44K_v2
GGCCCGCCGTATTCGGTATTCCTTCCTTTCCTTCCTTCGTCTCGCCCCGCTGCCGCACCA
GTCGTCCGCCGAGCTCTCCAGAAGGCCGAAGCCGCCGCCGTCCACGCCCCGTGAACAGAT
TTCTGTTACAGAAAACTTGAGGAATGGCTGATGAGGATGTCCAACCTATCGTGTGCGACA
ACGGCACTGGAATGGTCAAGGCTGGTTTTGCCGGTGATGATGCACCCAGGGCTGTCTTTC
CCAGCATTGTAGGAAGGCCACGCCATACTGGTGTTATGGTTGGTATGGGCCAAAAGGATG
CCTATGTGGGCGATGAAGCTCAGGCAAAAAGAGGTATCCTGACTTTGAAGTACCCCATTG
AACATGGCATTGTCAACAACTGGGATGACATGGAGAAAATATGGCATCACACCTTCTATA
ATGAGCTCCGTGTCGCACCCGAGGATCATCCTGTGTTGCTGACTGAGGCCCCCCTCAACC
CCAAGGCCAACAGAGAAAAAATGACCCAGATCATGTTTGAAACCTTCAGTTGCCCAGCAA
TGTATGTTGCAATCCAGGCCGTTCTGTCCTTGTATGCCAGCGGTCGAACAACTGGTATTG
TGCTTGACTCTGGTGATGGTGTGAGCCACACTGTTCCAATCTACGAGGGATACACCCTTC
CTCATGCTATCCTGCGTTTGGACCTTGCTGGCCGTGACCTCACGGATAATCTAATGAAGA
TCCTGACAGAAAGAGGGTACTCCCTCACAACAACCGCTGAACGGGAAATTGTCAGAGACA
TAAAGGAGAAGCTCGCTTATGTTGCCCTTGATTATGAGCAGGAGCTGGAAACGGCTAGGA
GCAGCTCCTCCGTGGAGAAGAGCTATGAGATGCCTGATGGTCAGGTTATTACAATTGGTT
CAGAAAGGTTCAGGTGTCCTGAGGTGCTGTTCCAACCATCTCATGTTGGTATGGAAGTTC
CTGGTACACACGAAGCGACATACAATTCCATCATGAAGTGTGATGTCGATATCAGAAAGG
ATCTGTACGGTAATGTTGTTCTCAGTGGTGGTTCTACCATGTTTCCTGGAATTGCTGATC
GTATGAGCAAGGAGATCACGGCCCTTGCTCCTAGCAGTATGAAGGTTAAAGTTATTGCAC
CACCTGAAAGGAAGTACAGTGTCTGGATTGGTGGCTCTATTTTGGCCTCTCTTAGCACTT
TCCAGCAGATGTGGATCTCCAAGGCAGAGTACGATGAATCTGGTCCCGGCATCGTCCACA
TGAAGTGCTTCTAAAAAGTCGGGGAATGTGGTTTACAAAGGGGACTTGCTGCCAAGAATA
TATAGTAGTGCATGGTACATGGTTAGTGTTCTGTAGAAGATGTGTACCCTCACATGAGTA
AGGGGTACATGAAAAATTCAGTATCGGTTGATCTTTTCCTATCGGCACAATGTCATGGCT
TTGCATGGTGTTTGCCTGCTGTATGAAATAATGAAATGGAACATATGTGTATTCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGCATGT

Homology of Contig U35_156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g36290.1	377	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi2g24070.1	377
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377