barSeed - Barley Seed Development Database

Probe CUST_26521_PI390587928

Source Contig U35_158

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26521_PI390587928	Hv_44K_v2	TGCGTGCCAGTTTGCGTTCGATTTGATCGGAAGAGATGGCGAGCAAGGGAGGCAACAAGG	83	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4447.1	2577	2e-24	2304 - 2363	100	60 / 60	minus	ABC00044 ABC00326 ABC00873 ABC43426
MLOC	MLOC_4447.2	2446	2e-24	2173 - 2232	100	60 / 60	minus	ABC00044 ABC00326 ABC00873 ABC43426
JLOC1	JLOC1_2767.1	2454	8e-25	216 - 275	100	60 / 60	plus
Harvest21	ABC00362	592	3e-25	84 - 143	100	60 / 60	plus
Harvest35	U35_158	862	3e-25	84 - 143	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_158 862 Hv_44K_v2
GAGGGCAAACCAGAGCATATCCACATCCATCGAGCGAACAGCAAGAACAACTCGATCAGT
CACAGACAGCGTCTCGAATCTGCTGCGTGCCAGTTTGCGTTCGATTTGATCGGAAGAGAT
GGCGAGCAAGGGAGGCAACAAGGGGGAGGGCCCTGCCATCGGCATCGACCTCGGCACCAC
CTACTCCTGCGTCGGCGTCTGGCAGCATGACCGGGTGGAGATCGTCGCCAACGACCAGGG
CAACCGCACCACTCCGTCCTACGTCGCATTCACCGACACCGAGCGGCTCATCGGCGACGC
CGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTTTTTGATGCCAAACGGCTCAT
CGGGCGTCGCTTCTCGGACGCATCCGTGCAGTCGGACATGAAGATGTGGCCGTTCAAGGT
GATCCCCGGCGCTGGCGACAAGCCGATGATCGTGGTCACCTACAAGGGGGAGGAGAAGAC
CTTCTCTGCCGAGGAGATATCCTCCATGGTGCTCACCAAGATGAAGGAGATCGGTGAGGC
CTACCTCAGCACCACCATCAACAACGCCGTCGTCACTGTGCCGGCCTATTTCAACGACTC
GCAGCGCCAGGCCACCAAGGACGCCGGGGTCATTGCCGGCCTCAATGTGATGCGCATCAT
CAACGAGCCCACTGCCGCCGCCATCGCCTACGGCCTTGACAAGAAGGCCAGCAGCTCCGG
CGAGAAGAACGTGCTCATCTTCGACCTTGGCGGCGGCACTTTCGATGTGTCGCTGCTCAC
ATCGAGGAGGGCATCTTCGAAGTGAAGGCCACCGCCGGCGACACCCCCTCGGCGGCGAGG
ACTTCGACAACCGCATGGTGAA

Homology of Contig U35_158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16920.1	654	2e-136	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi1g66470.1	659	7e-141
Arabidopsis v10	AT1G56410.1	617	2e-128	\| Symbols: ERD2, HSP70T-1 \| heat shock protein 70 (Hsp 70) family protein \| chr1:21117147-21119241 FORWARD LENGTH=617