barSeed - Barley Seed Development Database

Probe CUST_26518_PI390587928

Source Contig U35_19991

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26518_PI390587928	Hv_44K_v2	TGTTAAGAGGGATGGCCTTGAGGTCACTGATGATGTTTCCATTGTAGAATACTTGAAACA	825	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51097.3	1359	2e-24	1028 - 1087	100	60 / 60	plus	ABC14307
MLOC	MLOC_51097.4	1791	2e-24	1078 - 1137	100	60 / 60	plus	ABC13743 ABC14307
MLOC	MLOC_51097.1	2046	2e-24	901 - 960	100	60 / 60	plus	ABC13743 ABC14307
JLOC1	JLOC1_32609.1	1768	8e-25	896 - 955	100	60 / 60	plus
Harvest21	ABC14307	1046	3e-25	727 - 786	100	60 / 60	plus	ABC14307
Harvest35	U35_19991	1145	3e-25	826 - 885	100	60 / 60	plus

Contig Sequence (1145 bp)

>U35_19991 1145 Hv_44K_v2
GTCGCCCCTCCGCTCCGGCCGCCCATCGCCAGCAGCACCACCCCCTCTCCCTCCCATTGG
GCCACCTACCAGCGCCTCCGGCATGGAGCTCCGCCTCTGCCTCCACCTCCACTCCCACGC
GCGCCCCCCTTCCGCCCCGACGCCGCCGCCATGCCCCGCGGCCGTGCTGCTTCCCGCGTC
CCGCCGCCTTCGGATTGGTAGGAGCTGCGGGGTTGCTCCGCGGCGGAGTACGAGGCGTTC
GCATTCAGCCATCTGCGCTGCTGAACCGGACGGCGCGCAGGGCGGGGAGGCTGTCAAGGA
GAGGAGCGTCTCGGTGATCCTCCTGTCCGGAGGGCAGGGAAAGAGAATGGGGGCCAATAT
GCCTAAGCAGTATCTACCATTACTGGGAGTACCAATTGCTCTGCACAGTTTAAAGACATT
CTGTGCAATGAAGGAAGTGAAAGAAGTCGTGGTGGTGTGTGATCCATCCTACAAAAATGT
ATTTGAAGGTTCTGCTGAAAATTTGCAAATACCTATTAAATTTACAACCCCGGGAAAAGA
GAGACAAGACTCTGTTTTTAATGGACTTCAGGAAATTAATGGAGATTCAGAACTTGTTTG
TGTCCATGATTCTGCAAGACCCTTGGTATCCTCTGAAGATGTGAAAAAGGTCTTAGAAGA
TGCTGCGGTGCATGGAGCAGCTGTTCTCGGTGTGCCCGTCAAAGCTACTATAAAGGAGGC
CAACAGCGATTCTTTCGTCGTAAAAACCCTTGATAGGAAAACTCTTTGGGAAATGCAAAC
TCCGCAGGTAATGAAGCCTAATCTGCTCAGAGATGGTTTCGAGCTTGTTAAGAGGGATGG
CCTTGAGGTCACTGATGATGTTTCCATTGTAGAATACTTGAAACATCCTGTTTACATCAC
CGAGGGCTCTTATACAAACATCAAGGTGACTACTCCTGATGACATGCTCCTAGCTGAGCG
TTTGATGAATGATAAATAGGGCCGATATGAACAATATTTACTTGATTTGAGAGGCACCTG
TATGAATTTATCAGCACGAAATTCCATTGCCTTTCCACAGTTTTGGCCTCTTGGAAACTA
GAAAAATAAACATGTAGCTCATACACGAGATATATAACCTGTATGTAACATTCAAAAAAA
AAAAA

Homology of Contig U35_19991 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66360.1	357	3e-158	protein\|2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g57260.1	295	6e-162
Arabidopsis v10	AT2G02500.1	302	2e-115	\| Symbols: ISPD, ATMEPCT, MCT \| Nucleotide-diphospho-sugar transferases superfamily protein \| chr2:671054-673124 REVERSE LENGTH=302