barSeed - Barley Seed Development Database

Probe CUST_26508_PI390587928

Source Contig U35_16004

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26508_PI390587928	Hv_44K_v2	CCGTTTACAAACATTCCTGATTGTTCATACTGGATGCCTGTTTATCATGATAATTGTTTC	1539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364632	1676	2e-24	1543 - 1602	100	60 / 60	plus	ABC01983 ABC04827 ABC04828
MLOC	MLOC_5776.1	1772	6e-24	1697 - 1755	100	59 / 59	plus	ABC01983 ABC04827 ABC04828
MLOC	MLOC_5776.3	1755	6e-24	1680 - 1738	100	59 / 59	plus	ABC01983 ABC04827 ABC04828
JLOC1	JLOC1_3737.1	1810	3e-24	1656 - 1714	100	59 / 59	plus
Harvest21	ABC04827	573	3e-25	494 - 553	100	60 / 60	plus	ABC04827
Harvest21	ABC04828	1631	1e-24	1550 - 1608	100	59 / 59	plus	ABC04828
Harvest35	U35_16004	1620	3e-25	1540 - 1599	100	60 / 60	plus

Contig Sequence (1620 bp)

>U35_16004 1620 Hv_44K_v2
CGCATCCCCTCCATCTCCCTCTCCCACTCCGGCGGCGGCACCAGCAGCGTCAGCGGCGGC
GTACCCCTAGCGCGGAGGAGAGAAGTAGTCCGTCCGGCCATGGCGACGATCGTGAACACG
ACGGAGGAGGAGCCGATGCTGGCGGTGGTGCGCTCCATCGCGCAGCAGACCTGGGCCGAC
GCCGGCCCCGAGGTCGCCGACCCGGAGGTGGCCCGCCTCTGCGCCGAGGCGCAGCAGCAC
GTCCTCGCCGGCCGCTGGCTCGACATGGCCGCCCTCATGCTCGCCTCCGCCGACCTCCTC
CTCCTCTCCCCCCGCGTCCCCGACAAAGAGCTCGAGTGCATCCTCACCGTCATCTGCAAC
CTCGTCACCAAGGCCGGATCCGAGGACGAGTCGCTGGAGATCGCCAGGCTCATCTGCGCC
AAGCTCACCCACCAGCCCGCCGACAAGACCACGCTGCGCATCAAAGTCCTCTTCAGCCTG
TACAACCTGCTGGCGAGCCCCTCCGGCAAGGCCTTTGTCTACAGGAAGGCGCTCGAGCTC
GCCGCAGCCGGGAAGGCCGCCGACTGCGTCGTCCCCACCTTCAAGAACATCGACGCCTTC
GTCGCCTACTGGGGCATCGGCAAGCCGGAGCAGAGGGACCTGTTCCTCGCCGTCTCCAGG
GTTCTCAAGGACCAGAAGGGCATGGCCAAGGAGTACTTCAAGTTTCTGAACAAGTACCTG
GCCATGTTCGATGGATCGGCTGATGAGGCCGACGCAATCGGTGCCGCAAAGGAAGAAGCT
GCTGCAGCAATCATTGAGTTTGTCAAGTCATCTGATCTCTATCAGTGTGACCTGCTCGAA
ATGCCAGCTGTTGCACAGCTCGAGAAAGATGAGAAGTATCAGCCAGTTTACGAGCTACTG
AAGATATTCCTTACTCAGAGGCTCGGATCCTATTTAGAGTTTCAGACTGCTAACTCTGCC
TTGCTGCAAGGATATGGACTGGTTCATGAGGAGTGCATTACCAAAATGCGTCTTTTGTCC
CTGCTTGATCTGAGCGGCCATTGTTCTGGGGAAATTCCTTACTCTGCAATTACAAAAGCC
CTTGAGATTAATGATGATGAGGTGGAATATTGGATTGTGAAAGCAATTTCATCCAAGATT
TTGGACTGCAAAGTTGACCAGCTTAATCAATTGGTCATTGTCAGCCGGCATACTGCGAGG
GTCTTTGGGATGCCACAATGGCAGAGTCTACGTTCAAAGCTTGGAGTGTGGAGGGGAAAC
ATCGCAAATGCTATCAACACGATCCAAGCTAACAAGGTGACTGAAGATGGCGGGCAGGGG
ATGCAAGGATTGATGATCCGCTGATCGGAGGGGAGTCCCCAAACCGAGACTATAGTCTGT
GAGATTAGATGAGCAATCTTTTTGTATTAGACATCTTGTAATCCGAAATACTTCTACCAC
ATGATCATGCTGGCTTTATCCTGGTTTGCAGCGTCGTGCTAAGCAATCTCATGTTGCATG
AATTTTGTAGTCAAAAGCCATACTGGATGATCATGTCAGCCGTTTACAAACATTCCTGAT
TGTTCATACTGGATGCCTGTTTATCATGATAATTGTTTCTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01290.1	417	0.0	protein\|proteasome subunit, putative, expressed
Brachypodium v1_2	Bradi5g02340.1	415	0.0
Arabidopsis v10	AT3G02200.2	417	1e-125	Proteasome component (PCI) domain protein \| chr3:406692-408919 FORWARD LENGTH=417