barSeed - Barley Seed Development Database

Probe CUST_26507_PI390587928

Source Contig U35_19997

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26507_PI390587928	Hv_44K_v2	AAGAGAGGAGAATGCAGGTATTGTCTATTTGTGCTAGCTACATGCGGCTCGAAGTTTTTT	785	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6852.1	1859	3e-21	1806 - 1859	100	54 / 54	plus	ABC08500 ABC12666 ABC17636
JLOC1	JLOC1_4488.1	1914	8e-25	1717 - 1776	100	60 / 60	plus
Harvest21	ABC12666	895	3e-25	786 - 845	100	60 / 60	plus	ABC12666
Harvest35	U35_19997	895	3e-25	786 - 845	100	60 / 60	plus

Contig Sequence (895 bp)

>U35_19997 895 Hv_44K_v2
CAGGTGCACAGGAGGTGGAAGCTGCAGCTCAGAACAATGCTGCTGAGGAAGAAAATGAGA
GGAAGAGTCATGGCATTGAAGATGAATCAGGACAGACGACTCGAGTTACTGATGAAGAAG
CTGCAGGAAGCAAAGAAATCAATGGGGATCAGATGGATGTGGACAACGCAGATGTAGATG
GAGAACTTGTAGGTCCTATTCCTCCGTTGCCGTATGCTCAAGTGGATAGCGATGGAGCTT
CAGTTGAACAGAGTACCTCCAACGCTCAGCACGGTGACAGCGTTACCAACGTGGAAGCTA
TTGACAAGGTTGATTCATCCAAATTGGATGGTCAGGACAATACCGATGCTAGCATGGATG
TTGATGCTCCTAGCCAGGAAGAGGGAAAAAATGTTCTTCCTGCTCCTGATGTTATTACCA
GTGTAGATGCAGGGAACACACCCCTATCTTCAGATCAGTCTGTCTCGAATGAAGAGAGTG
CCGTGGTCCCTGAATGAAAACATCTTCTGCCGACCTCATCTGCGTGGATGTGACAAGCAC
GATGATGAGAAAGGTGACTACAAACAGCGACGCAGTTGCAAAGTGTGAAGTGTGTACGTG
TAGGTAAAATTGTTGATGGAAGACCCAAGGTGGCCCCAAGAGAAGCAAATTGGATGTTCA
AAGTTGTAGACTAACACTTTCACCTGTGTGCCAATCTTCAGTTTATGTTGGCCTGAACGT
TTTTGGATGGTAGAAACCTGACATTTGCAATTTTTTTCCTAAGGAAAGTATGAACTTGAG
GAAAAAAGAGAGGAGAATGCAGGTATTGTCTATTTGTGCTAGCTACATGCGGCTCGAAGT
TTTTTTTTATTGGGTTCTGTTGAAATCTCCAAAACTCTTGCTTATTTAAAGCATT

Homology of Contig U35_19997 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None