barSeed - Barley Seed Development Database

Probe CUST_26479_PI390587928

Source Contig U35_18973

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26479_PI390587928	Hv_44K_v2	CTGCTCACTTTTAATAATTACACAAAGAGCCAAGAAGAAAGATTTGAAGGATGGAGATGA	1336	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79717.1	2028	2e-24	1875 - 1934	100	60 / 60	plus	ABC13294
JLOC1	JLOC1_53085.1	1977	8e-25	1770 - 1829	100	60 / 60	plus
Harvest35	U35_18973	1402	3e-25	1337 - 1396	100	60 / 60	plus

Contig Sequence (1402 bp)

>U35_18973 1402 Hv_44K_v2
GGACTTCTGGGTGCTCTTCTCGTCGTTCCTGATGGGGGTGGGCACGGGGCTGGCGGTGAT
GAACAACCTGGGGCAGATGGGCGTGGCCATGGGCTACGCCGACGTCTCCCTCTTCGTCTC
CATGACCAGCATCTGGGGCTTCTTCGGCCGCATCGCCTCTGGCACCATCTCCGAGCACTT
CATCAAGACGAGGGCGCTGCCGCGGCCCGTGTGGAACGCGGCGTCGCAGGTGCTCATGTG
CGCAGGGTACGTGCTGATGGCGTTCGGCATGCCGGGATCCCTCTTCGTCGGCTCGGTGGT
GGTCGGCGTCTGCTACGGCGTGCGGCTGGCGGTCACCGTGCCCACGGCGTCGGAGCTGTT
CGGCCTCAAGTACTACGGCCTCATCTACAACATCCTCATCCTCAACCTGCCGCTCGGATC
CTTCCTCTTCTCGGGCCTCCTCGCGGGACTCCTCTACGACGCGGAGGCCACCAAGGTGCC
CGGCGGTGGCAACACCTGCTCCGGCGCTCACTGCTACCGCCTCGTCTTCGTCGTCATGGC
CGCTGCCTGCGTCGTCGGCTTCGGCCTCGACGTGCTCCTCAGCCTCAGGACCAGGCGGGT
CTACGCCAAGATCCACCAGGCCAAGCGGGCCAAGAGGTTGGCCGCCGCCGCACAGAGGGT
GAGCTAACCTCGCTGCCGCTCTTCTCATGAGAAACTGCACAGTTTACAGCCTTTCAGGCT
GAAGAACAGTCCTCTAAATTTTGCGCATCAGTTAAGGGGATGCCTTGATTAAGTGGATAC
ATGCCTTGATTCTTTGGGCAAAGATGGATAGTATAGATTCAATTGGTATACTCATACTCA
TACGTATGGATGGATGGTATACACTATGGCTATGTGCATCGATCTATGCAAATGCCACCA
TTTTCTGAAAACAGATTGTGTACTGCCAGGGAAGTTCATAGGCTGCTAGATGGAACTGTT
GTTTTTGTTAGGTGAAGTAGAATGCTCCTGCCTGAGAAGGCGTTGGATCGTGTGGCTTTC
CAACCCCTTTCAGTTTCGCATGTATCTTGCTGAGAAGGTTGTAAACTAGTACGGAGTACT
ATGTTGCTGTTTGTAGCCAATTCGGCATTAGATGTCGCAACAATTCAAGTGCATATCTTT
TCATCAGCGGAAGCTGGCGGCTCCTCGAGCAAAGGCCTCGACGACTTCGTTGCTTACGTC
ACAAGGTGATCAGCGTATCTGTTCATGCCATAGACAAATACACAGAAATCTTCGCATGTG
TTTCAACCTTTGAATTAGGCTTTGTACGAAAGCTGGATTTCAGTATACAATGACTTGTCG
GTTTCAATGTATCCATCTGCTCACTTTTAATAATTACACAAAGAGCCAAGAAGAAAGATT
TGAAGGATGGAGATGATTATCT

Homology of Contig U35_18973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36600.1	553	6e-86	protein\|nodulin, putative, expressed
Brachypodium v1_2	Bradi4g36420.1	561	9e-86
Arabidopsis v10	AT4G34950.1	567	3e-71	Major facilitator superfamily protein \| chr4:16642544-16644759 REVERSE LENGTH=567