barSeed - Barley Seed Development Database

Probe CUST_26446_PI390587928

Source Contig U35_15007

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26446_PI390587928	Hv_44K_v2	TGAAATTGCTGCTCAAATTTGTCGTCAAGCTGGTCTTGTTAAAAGGTTGGAGCAAAGCAA	673	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353955	1910	2e-24	640 - 699	100	60 / 60	plus	ABC02464 ABC02465 ABC49712
MLOC	MLOC_14779.3	1084	2e-24	675 - 734	100	60 / 60	plus	ABC02464 ABC02465
MLOC	MLOC_14779.2	1432	2e-24	1025 - 1084	100	60 / 60	plus	ABC02464 ABC02465
MLOC	MLOC_14779.1	1189	2e-24	723 - 782	100	60 / 60	plus	ABC02464 ABC02465
JLOC1	JLOC1_10098.2	1422	8e-25	678 - 737	100	60 / 60	plus
JLOC1	JLOC1_10098.1	1468	8e-25	724 - 783	100	60 / 60	plus
Harvest21	ABC02464	1926	3e-25	608 - 667	100	60 / 60	plus	ABC02464
Harvest35	U35_15008	1969	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_15007	736	3e-25	674 - 733	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_15007 736 Hv_44K_v2
TCTCCTCGCGACTAACCCCTCTCGAATCCCAGCCAACTAGCGCCCAATCCACGGAGAATT
GGGTTGATCCTTGTGCTGTGTTTGTTCCCGTTCTCGGATCCTGGACCAGGATCCGACCAA
GAGCCCAGATCTGCTGGTTGTTCGTCGCCAGCATGGATCTGGCGAAGGATGGCGCCGAGA
TGGAGGAGGGGACATTGGAGATCGGCATGGAGTATAGGACTGTCTCCGGTGTGGCAGGGC
CGTTGGTTATTTTGGACAAAGTAAAGGGCCCAAAGTATCAGGAGATTGTGAACATCCGAT
TGGGAGATGGCACCACTCGTCGTGGTCAAGTCCTCGAAGTTGATGGTGAAAAAGCTGTTG
TGCAGGTCTTTGAAGGTACTTCCGGGATAGACAACAAGTATACTACTGTGCAGTTTACAG
GCGAGGTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGCCGCATTTTTAATGGTTCTG
GAAAACCTATTGATAATGGTCCCCCTATATTGCCCGAGGCTTATTTGGATATTTCTGGAA
GTTCTATCAACCCAAGTGAGAGAACCTATCCAGAAGAGATGATTCAAACAGGAATATCCA
CCATTGATGTCATGAACTCGATTGCTCGAGGGCAAAAAATTCCTCTTTTCTCTGCTGCTG
GACTCCCTCATAATGAAATTGCTGCTCAAATTTGTCGTCAAGCTGGTCTTGTTAAAAGGT
TGGAGCAAAGCAAGCA

Homology of Contig U35_15007 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g37180.1	489	5e-124	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi3g08290.1	488	3e-129
Arabidopsis v10	AT1G20260.1	487	9e-122	ATPase, V1 complex, subunit B protein \| chr1:7016971-7020290 FORWARD LENGTH=487