barSeed - Barley Seed Development Database

Probe CUST_26445_PI390587928

Source Contig U35_15008

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26445_PI390587928	Hv_44K_v2	GCGTACATGCGGAAGATGTTGGTTATATGTTTTTGGACTTGTGGAAAATGTAAAGAATAT	1806	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.178	1.517	1.141	0.907	0.393	0.495
Raw	2154.420	4107.687	2818.297	3417.730	538.972	731.812

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353955	1910	2e-24	1839 - 1898	100	60 / 60	plus	ABC02464 ABC02465 ABC49712
JLOC1	JLOC1_45971.1	992	8e-25	826 - 885	100	60 / 60	plus
Harvest21	ABC02464	1926	3e-25	1807 - 1866	100	60 / 60	plus	ABC02464
Harvest35	U35_15008	1969	3e-25	1807 - 1866	100	60 / 60	plus

Contig Sequence (1969 bp)

>U35_15008 1969 Hv_44K_v2
GCTCCGTCTTCCTCTCCCTCTCATTTTGCTATCTCGTTACCTCTCTGCTGCCAACCCAAC
CCAACCCAAGGTTGTTCGTCGCCAGCATGGATCTGGCGAAGGATGGCGCCGAGATGGAGG
AGGGGACATTGGAGATCGGCATGGAGTATAGGACTGTCTCCGGTGTGGCAGGGCCGTTGG
TTATTTTGGACAAAGTAAAGGGCCCAAAGTATCAGGAGATTGTGAACATCCGATTGGGAG
ATGGCACCACTCGTCGTGGTCAAGTCCTCGAAGTTGATGGTGAAAAAGCTGTTGTGCAGG
TCTTTGAAGGTACTTCCGGGATAGACAACAAGTATACTACTGTGCAGTTTACAGGCGAGG
TTTTGAAAACTCCTGTCTCACTTGATATGCTTGGCCGCATTTTTAATGGTTCTGGAAAAC
CTATTGATAATGGTCCCCCTATATTGCCCGAGGCTTATTTGGATATTTCTGGAAGTTCTA
TCAACCCAAGTGAGAGAACCTATCCAGAAGAGATGATTCAAACAGGAATATCCACCATTG
ATGTCATGAACTCGATTGCTCGAGGGCAAAAAATTCCTCTTTTCTCTGCTGCTGGACTCC
CTCATAATGAAATTGCTGCTCAAATTTGTCGTCAAGCTGGTCTTGTTAAAAGGTTGGAGC
AAAGCAAGCACGCAGCAGAGGGCGGTGAAGAAGACAATTTTGCAATTGTGTTTGCTGCTA
TGGGAGTAAACATGGAAACGGCACAATTTTTCAAGCGTGACTTCGAAGAAAATGGTTCGA
TGGAGCGGGTCACCCTTTTCCTGAATTTGGCAAATGACCCCACTATTGAGCGTATTATCA
CTCCTCGAATTGCCCTAACAACTGCTGAATATTTGGCATATGAATGTGGGAAGCATGTTC
TTGTCATTCTGACAGATATGAGCTCATACGCCGATGCACTTCGCGAGGTCTCCGCAGCAC
GAGAAGAGGTGCCTGGTAGGCGTGGTTATCCTGGGTATATGTATACTGATCTGGCCACCA
TATATGAGCGAGCTGGACGTATCGAGGGAAGAAAGGGGTCAATTACCCAAATTCCTATCC
TTACAATGCCTAATGATGATATCACTCATCCAACTCCTGATCTTACGGGATACATTACCG
AAGGTCAGATATATATTGACAGACAGCTTCATAATAGACAGATATACCCACCCATCAACG
TCCTGCCATCTCTTTCTCGTCTGATGAAGAGTGCTATTGGTGAAGGTATGACACGCCGGG
ATCATTCAGATGTGTCCAATCAGCTGTATGCCAACTACGCCATTGGGAAGGATGTTCAAG
CCATGAAAGCAGTTGTAGGAGAGGAGGCTCTTTCATCCGAGGACCTGCTCTATTTAGAAT
TCCTGGACAAGTTCGAGAGGAAATTTGTAGCACAAGGAGCATATGATACTCGGAACATTT
TTCAGTCACTTGATCTGGCATGGACTTTGCTACGTATATTCCCCCGTGAACTTCTGCACC
GTATTCCTGCGAAGACCTTGGATCAATTCTACAGCAGAGATGCCACCCATTGATCCTTTT
TGTTCATAAAAAAATAATTTTTTCATTAAGAGCAGCTTGAATAAGAGAGAAATCCAAAGT
TGTACTATCATTTTGCTACGCTATATAGTCAAATCCTATTCTTTCAGTCTGTATGCACAA
GTTGTACCCCACATGTCTTGTGCACCTGGCAGCTTTGTAATTTCCATGTAGCCTCGAGTC
ACAAGCTAGACCATTTTCTGGTTTTCATTTCCCTGTATTGTGCAGCAAAACTGAAAAGCC
GTTTAGGCGTACATGCGGAAGATGTTGGTTATATGTTTTTGGACTTGTGGAAAATGTAAA
GAATATTATTTTGTTCCTAGTTAAGGCTTGTAAGTTAAATTGGTTGATACAAAAAAAAAA
ATGTTGGTTAAATCGGAGAAATTAAAAGAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37180.1	489	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi3g08290.1	488
Arabidopsis v10	AT4G38510.5	494	ATPase, V1 complex, subunit B protein \| chr4:18011155-18014897 REVERSE LENGTH=494