barSeed - Barley Seed Development Database

Probe CUST_26444_PI390587928

Source Contig U35_15009

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26444_PI390587928	Hv_44K_v2	GCCTGTGTAATTATTTTCTCTTGGTACTTCTTTACTTTGATGAAACTTGAAGCGCACATT	1988	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.687	1.653	1.082	0.956	0.271	0.236
Raw	54.945	80.912	48.128	66.229	5.239	5.470

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39889.1	2249	8e-25	2100 - 2159	100	60 / 60	plus
Harvest21	ABC02465	2070	3e-25	1994 - 2053	100	60 / 60	plus	ABC02465
Harvest35	U35_15009	2065	3e-25	1989 - 2048	100	60 / 60	plus

Contig Sequence (2065 bp)

>U35_15009 2065 Hv_44K_v2
GGGCTGCAGGAATTCGGTACGAGGGTCGCCCACACGATCCACCAGCACCCACCTCCACCT
CCACCTCCCTCTCCTCGCCGTCTCCCACCGACCCCAACCCGAGGTTGCGCTTCGTTGGGT
TCAGCATGGGTCTGGTGAAGGAGGGCGCCGACATGGAGGAGGGAACCCTGGAGATCGGCA
TGGAGTACAGGACAGTTTCTGGTGTGGCAGGACCTCTGGTTATCTTGGACAAAGTAAAGG
GCCCAAAATACCAGGAGATTGTAAACATCCGATTGGGAGATGGCACCACTCGGCGTGGTC
AAGTTCTGGAAGTTGATGGTGAAAAGGCTGTTGTGCAGGTCTTCGAAGGCACTTCAGGAA
TAGACAACAAATACACAACTGTTCAGTTCACAGGCGAGGTCCTGAAAACTCCTGTATCGC
TTGATATGCTTGGGCGTATTTTTAACGGCTCTGGAAAGCCTATTGATAATGGCCCTCCGA
TATTGCCTGAGGCCTACTTGGATATCTCCGGAAGTTCTATTAACCCAAGTGAGAGAACCT
ACCCAGAGGAGATGATTCAAACAGGGATATCTACAATTGATGTCATGAACTCCATTGCTC
GAGGGCAAAAGATTCCTCTCTTTTCTGCTGCTGGTCTTCCTCATAATGAAATTGCTGCTC
AGATTTGTCGTCAGGCTGGTCTTGTCAAGAGGCTGGAGAAAGGAAAGCACGCAGAGGGTG
GTGGTGAAGATGACAATTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAGACAG
CCCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCAATGGAGAGGGTCACCCTTTTCC
TGAACTTGGCAAATGATCCCACGATCGAACGTATTATCACCCCTCGTATTGCGCTAACAA
CAGCAGAATATTTGGCATATGAATGTGGGAAGCACGTTCTTGTCATCTTGACAGATATGA
GTTCATATGCAGATGCACTTCGTGAGGTATCAGCAGCCCGAGAAGAGGTGCCAGGTAGGC
GTGGTTATCCTGGATATATGTATACTGATCTGGCAACCATTTATGAGCGTGCCGGGCGTA
TTGAAGGAAGAACGGGCTCCATTACCCAAATACCCATTCTGACTATGCCTAATGATGACA
TCACACATCCAACTCCTGATCTCACGGGGTACATTACTGAAGGACAAATATACATTGACA
GACAGCTCCATAACAGACAGATATACCCACCCATCAACGTCCTTCCATCTCTCTCTCGAT
TGATGAAGAGTGCTATTGGTGAGGGTATGACCCGTCGAGACCATTCAGATGTGTCTAATC
AGCTTTATGCCAACTATGCTATTGGAAAGGATGTCCAGGCCATGAAAGCAGTTGTGGGAG
AGGAGGCTCTCTCTTCTGAAGATCTGCTTTATCTAGAATTCCTGGACAAATTTGAGAGGA
AATTCGTAGCACAGGGAGCATACGATACTCGGAACATCTTCCAGTCACTTGACCTAGCAT
GGACATTGCTTCGCATCTTCCCTCGCGAGCTGCTCCACCGTATCCCCGCGAAGACTTTGG
ATGCGTTCTACAGCAGAGATGCTGCCCACTGATCGATCTCATCTTTGTTGGGAGATCCAA
TGTTTTCTCAAGTGCAGCTTGAATAAATTGAGCAGTTCAAACTTCTGGCCTTTTTGCTGT
AGTTATTATTATAGTCAGATCCCATTCTTTTCGAGTCAGCGAGCATAAGTTATTTGTAGA
TTTCTTGGTCATGGCGTCTTTTGTAATATTGTCTCGTGTAATATCACCTCCTGTATTGTT
GAACCAAAGCACTTGAGCTCTTTTTTGGTTCCACTTCCCAGAACTGTTAGCAAGAGCATC
CTAGGCCAAGATGCTCGAACACGCTGGTTGTATCTACTTTTGTGTATGAATAAAGATGGG
GCAATAAACCGTGCTGGACTGCACGTGCTGGTGTACATTGTTAAAAAAAAAAAAAAAAGG
GTTCTGTAGCCTGTGTAATTATTTTCTCTTGGTACTTCTTTACTTTGATGAAACTTGAAG
CGCACATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15009 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37180.1	489	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi1g37582.1	489
Arabidopsis v10	AT4G38510.5	494	ATPase, V1 complex, subunit B protein \| chr4:18011155-18014897 REVERSE LENGTH=494