barSeed - Barley Seed Development Database

Probe CUST_26441_PI390587928

Source Contig U35_15013

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26441_PI390587928	Hv_44K_v2	ACATCCAGAGAATCCCAGGTATGAGATATTTCTCTTCTGATGATTATTTTATCCTCCCTC	811	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27504.7	1072	2e-24	172 - 231	100	60 / 60	minus	ABC05376 ABC05377
MLOC	MLOC_27504.4	1042	2e-24	269 - 328	100	60 / 60	minus	ABC05376 ABC05377
MLOC	MLOC_27504.2	1240	2e-24	340 - 399	100	60 / 60	minus	ABC05376 ABC05377
MLOC	MLOC_27504.6	1190	2e-24	396 - 455	100	60 / 60	minus	ABC05376 ABC05377
MLOC	MLOC_27504.1	2020	2e-24	1035 - 1094	100	60 / 60	minus	ABC05376 ABC05377
JLOC1	JLOC1_18562.1	1427	8e-25	738 - 797	100	60 / 60	plus
Harvest21	ABC05377	1622	3e-25	812 - 871	100	60 / 60	plus	ABC05377
Harvest35	U35_15013	1623	3e-25	812 - 871	100	60 / 60	plus

Contig Sequence (1623 bp)

>U35_15013 1623 Hv_44K_v2
GGTCGCCTCCTTCCCTTCCGATTGCCGCCGCCACCTCCCTCCCCATCCCCTCGCCGCACC
CGCTGTAGCTCCCACCCTCCCAGCCGCACCAGTGCACGTTGTCGTTCGCTCCTCTACCTG
CAGGCGATGCCGAGCCCGCGGTCTCCCTCCCCAAGATTGCTCTGGAGCCCGCTGTCCTCC
TACACCTACAGCGGGAACATGCAGGAGCAGCAGTGAGCCAGATCTGGGCCTTGTCGAGGA
GGTCTGTCTCTGGAGCCGCTGATGGGGGCCATAGCGGCGGGGAACGCCGTGGCGCTGAAG
CCGTCGGAGCTGGCGCTGTCAACGGCCAGGTTCCTGGAAGAGAACATAGGCGAGTACCTG
GACGCCAATGCGGTGAAGGTCATCCAGGGCGGCCCCGCGGTGGGCGAGCAGCTGATGGAG
CACCAATGGGACAAGGTCCTCTTCACCGCAATTTGGCAGGGTGCCTGCGCGTGGCACGCG
TGGTGATGGCGGGGCGACGAAGCACCTAACGCCGGTGGCGCTGGAGCTGGGCGGGAAGTG
CCCCTGCATCTTCGAAGCCGTTGCCGGCTAGAGGAACCTCCAGTCCTGTGTGAACCGCGT
GATCTTCGCCAAGTGGTCATCCTGCGCCGGCCAGGCCTGCATCGCCATCGACTACGTGCT
CGTCGAGGAGCGATTCGCGCCCACCCTGTTGCTCAAATCGACGCTCAAGAGGTTCATCAC
CGACTCGGACGAGATGGCGCGGAACGTCAACGCGCGACATTTCAAGCGGCTGAGTAACCT
CCTCAAGGACCCGGCGGTGGCGGCATCCATTACATCCAGAGAATCCCAGGTATGAGATAT
TTCTCTTCTGATGATTATTTTATCCTCCCTCCAGAGAATCCCAGGTTGGTGGATCTGGTT
CTACTACATCTGCAGACCTGGCCTTGAGGGGGGCAGGGGGGCGGCGATTTAGCGAAGTAA
TCATATGTTGATGCAGTTCGTCGTCGTCTCATCTATGCCGATCTCCACTCCCGAGCGTCC
CCACCAAAAGATGCAGTCAGTACTCGTACACGGTGCCGCTTTCTTTGCCGCCATCAGACG
CTGGCATGCACAGAAGCATCGCCCGATTCGCCTAGCACTAGTTGCTAGAGACACACGCTG
AGTCCACATCGTGGTGTAGGCTCATCGCTGAACCATCCAGTCCATCCCAGGTACACTGTA
AGTTTGCATCCATAATAAATCAAGATCCAAACTATGGCGCCAGAGGGCCACAACACTACA
TTTTCTTCCTGCGTCTGAATCTAATCAAACGAGCAAAAATATACTGCTGAGACTCAATGG
ATGATCTGAAGCACCCAAAAGAAGTAGAGGACAGGTCAAGAGCAGGGAACAAGAAGCTTC
GATTATCATTGATGTTATGTGTGATCAATAAAAACTTGTGCTTCTCATTCAATCTTTGTT
GAACTATGTTGATGTGTGATTATGCACTTGTCGGATCCTTTTGTTGTGCACCTGCACTTG
TAGAACTATTTTGTTGTGCACTTGTTGGGCCTTAAATCTTTATGTGTAGAGGAACCGATG
GATGATGTATTGTAATTCATGTGATGTGCTACTGAAATGAAACATAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_15013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45720.1	500	1e-67	protein\|aldehyde dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g17110.1	496	4e-71
Arabidopsis v10	None