barSeed - Barley Seed Development Database

Probe CUST_26429_PI390587928

Source Contig U35_14483

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26429_PI390587928	Hv_44K_v2	GAAGGGAAACTGGATGGATGCTATGTTATTGGTACTTTGTCATGGATACAATATTTGAAT	2742	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.089	0.393	1.022	0.906	1.221	1.361
Raw	14515.457	96966.433	220254.333	259182.666	141090.333	174787.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59358.4	2865	2e-24	2725 - 2784	100	60 / 60	plus	ABC00602 ABC00748 ABC00823 ABC48303
MLOC	MLOC_59358.3	1609	2e-24	33 - 92	100	60 / 60	minus	ABC00602 ABC00748 ABC00823 ABC48303
MLOC	MLOC_59358.2	1606	2e-24	33 - 92	100	60 / 60	minus	ABC00602 ABC00748 ABC00823 ABC48303
MLOC	MLOC_59358.1	1679	2e-24	49 - 108	100	60 / 60	minus	ABC00602 ABC00748 ABC00823 ABC48303
JLOC1	JLOC1_38625.1	3048	8e-25	2878 - 2937	100	60 / 60	plus
Harvest21	ABC00823	2846	3e-25	2743 - 2802	100	60 / 60	plus	ABC00823
Harvest21	ABC48505	115	6e-22	54 - 113	97	58 / 60	minus
Harvest35	U35_14483	2849	3e-25	2743 - 2802	100	60 / 60	plus

Contig Sequence (2849 bp)

>U35_14483 2849 Hv_44K_v2
GCGCAGGCATTCGTCGCCCAGCCATTTCACTCGCTCGCTCGCTCTCACCGCGCACCAAAC
CCGGCCGGGGCAAGTTCGCCTCGCGTTTCCCCTGTGACGTTTCCTCGTTTCTCGCCCTCC
GGCTCCTCCGGAGCAAGGATTGAGGATAGCAATGGGGGAGACTGCAGGAGAGCGCGCCCT
GAGCCGTGTCCACAGCGTGAGGGAGCGCATCGGCGATTCCCTCTCTGCACACACCAATGA
GCTCGTCGCCGTCTTCTCAAGGCTTGTTAACCAAGGAAAGGGGATGCTGCAGCCCCATCA
GATCACTGCTGAGTACAATGCCGCGATCCCTGAGGCAGAGCGCGAGAAGCTGAAGAACAC
CCCCTTTGAGGATCTCCTAAGGGGCGCACAGGAGGCAATTGTCATCCCTCCATGGGTTGC
TCTCGCCATCCGGCCAAGGCCTGGCGTCTGGGAGTATGTGAGGGTCAATGTGAGCGAGCT
TGGTGTTGAGGAGTTAAGCGTCCCTGAGTATCTGCAGTTCAAGGAACAACTGGCGAATGG
AAGCACCGATAACAACTTTGTGCTTGAGCTGGACTTTGGGCCATTCAACGCCTCCTTCCC
ACGCCCATCGCTGTCGAAGTCCATTGGCAACGGTGTGCAGTTTCTGAACAGGCACTTGTC
GTCGAAGCTGTTCCATGATAAGGAGAGCATGTACCCATTGCTTAACTTCCTTCGCGCGCA
CAACTACAAGGGGATGACCATGATGTTGAATGACAGAATTCGCAGTCTCGGTACCCTCCA
AGGTGCACTCAGGAAGGCAGAGACACATCTGTCAGGCCTTCCAGCTGACACCCCTTACTC
CGAGTTCCACCACCGGTTCCAGGAACTTGGTTTGGAGAAAGGCTGGGGCGACTGTGCTCA
GCGTGCGAGCGAGACTATCCACCTTCTCTTGGACCTTCTCGAGGCCCCTGATCCATCCTC
CTTGGAGAAGTTCCTCGGAACAATCCCAATGGTGTTCAATGTTGTTATCCTCTCTCCTCA
TGGTTACTTCGCTCAGGCCAATGTCTTGGGGTACCCTGATACTGGCGGACAGGTTGTCTA
CATTTTGGACCAAGTCCGTGCTATGGAGAATGAGATGCTGTTGAGAATCAAGCAGCAAGG
TCTCGACATTACACCAAAGATTCTAATAGTCACCAGGATGCTCCCTGATGCACATGGCAC
CACCTGTGGCCAGCGCCTTGAGAAGGTCCTTGGCACCGAGCACACCCACATCCTGCGTGT
GCCATTCAAAACAGAAGATGGTATTGTTCGGAAATGGATCTCCCGTTTTGAAGTCTGGCC
TTACCTGGAAGCTTACACCGATGATGTGGCACATGAGATCGCCGGAGAGCTGCAGGCCAA
CCCTGACCTGATCATTGGAAACTACAGTGACGGTAACCTTGTCGCGTGTTTGTTGGCACA
CAAGTTGGGAGTTACTCATTGTACCATTGCTCATGCGCTCGAGAAAACCAAGTATCCCAA
TTCCGACCTTTACTGGAAGAAATTTGAGGATCACTACCACTTCTCATGCCAGTTCACCGC
CGACCTGATTGCAATGAACCATGCTGACTTCATCATCACCAGTACCTTCCAAGAGATTGC
CGGAAACAAGGACACCGTAGGGCAGTACGAGTCGCACATGGCATTCACAATGCCAGGCCT
CTATCGTGTTGTCCATGGTATTGATGTCTTCGACCCCAAGTTCAACATCGTGTCTCCTGG
TGCTGACATGTCCATCTACTTCCCATACACTGAACAGCAGAAGAGGCTTACCTCCCTCCA
TACTGAGATTGAGGAGCTACTATTCAGTGATGTTGAGAATGCTGAGCACAAATTTGTGTT
GAAGGACAAGAAGAAGCCGATCATCTTCTCGATGGCTAGGCTGGACCGTGTCAAGAATAT
GACTGGCCTGGTAGAAATGTATGGGCGGAATCCTCGCCTACAGGAGCTGGTAAACCTGGT
GGTTGTCTGTGGTGACCATGGAAAGGTGTCCAAGGACAAGGAGGAGCAAGCAGAGTTCAA
GAAGATGTTTGATCTTATAGAAAAGTACAACCTGAGTGGTCACATCCGCTGGATCTCTGC
TCAGATGAACCGCGTCCGCAACGGTGAGCTCTACCGCTACATCTGTGACATGAAGGGAGC
CTTTGTGCAGCCTGCTTTCTATGAGGCTTTCGGTCTTACAGTGATAGAGGCCATGACATG
TGGTCTTCCAACATTCGCCACTGCATACGGTGGTCCAGCTGAGATCATTGTGAATGGTGT
GTCCGGCTACCACATCGATCCTTATCAGAATGACAAGGCCTCCGCACTGCTTGTGGACTT
CTTTGGGAAGTGCCAAGAAGACCCGAGCCACTGGAACAAGATCTCACAGGGAGGACTCCA
GCGCATTGAGGAGAAGTACACCTGGAAGCTGTACTCTGAGAGGCTGATGACCCTTTCTGG
TGTCTATGGTTTCTGGAAGTACGTCTCTAACCTCGACAGGCGCGAGACTCGTCGCTACCT
TGAAATGCTCTATGCCCTCAAGTACCGCAAAATGGCTGCAACTGTCCCATTGGCTGTTGA
GGGCGAGACCTCGGGCAAATGATTTGTCCTTACCAGAGAAATAAATGGTGGGCGAGCGCT
CTGCTTTACAGTTCCCGATTCAGTGATGGAGCACAGATCGGAGAGTGTCATGCATCTGCT
TGTCCTTTGTTACCATTCCTGTTGAGTCCCCATGTTGTCATGGAAGGGAAACTGGATGGA
TGCTATGTTATTGGTACTTTGTCATGGATACAATATTTGAATGAATGAATAAGATAATCT
TTGTTTTAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g42490.2	817	protein\|sucrose synthase, putative, expressed
Brachypodium v1_2	Bradi1g60320.2	816
Arabidopsis v10	AT3G43190.1	808	\| Symbols: SUS4, ATSUS4 \| sucrose synthase 4 \| chr3:15179204-15182577 REVERSE LENGTH=808