barSeed - Barley Seed Development Database

Probe CUST_26383_PI390587928

Source Contig U35_26474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26383_PI390587928	Hv_44K_v2	TTATAGTGCTCTGAAGCGGTCACCAAAGGTTGAGACTCATTTTCAGGTGCTGCTACTGTT	393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15522.3	1557	2e-24	900 - 959	100	60 / 60	plus	ABC09645
JLOC1	JLOC1_10652.3	1838	8e-25	699 - 758	100	60 / 60	plus
Harvest21	ABC22982	620	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_26474	620	3e-25	394 - 453	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_26474 620 Hv_44K_v2
CAGGTTTCTTCTTGGTAGACGATGATTTGGCTGTACGCGACAACCCAACTGAGCCCGAAG
CCCGATGGGTAGGTAGGATTAGGTGGGGACTTGCCTGTGCCGAGATTATTTATACTTACT
CGTTATTAATTATTGCTGTGAAGTAGGCCCTCGTTGTTTGCTATCGCGCGCCCTGCCCGT
GCCGCCACTGCTGATTTCCTCACTGTTCATTTCGGGTTCAGTCTTTGCGTACGCGCTGTC
TTGTGATTAGCTGATTGGTTGATGGCTGTGACGATGAATTGCTGGGAGTCATGTTCTTCT
CGTGTGAAAAAGAATGATATTTTAGTGAGTTGTGAATCTGAGTGCGGTGACTAGCGGCGA
GCATAGTTTGGTTCTGCTACTACTTGCAGGATATTATAGTGCTCTGAAGCGGTCACCAAA
GGTTGAGACTCATTTTCAGGTGCTGCTACTGTTTGGTCATTTGGTGTGTATCCACTACCA
GTTGTGGGCACTGAGTGAAGTGAAGTGCTGGCATGGGGGGGCGTGTTTGGACGCCACGAC
GCCGGCAGGCAGAGCTCCCACGGTATGAAGCTAGAGTCGAAGATGGTGGAGTCCATGAAG
CAGAGAGCGTCGCATGGAAC

Homology of Contig U35_26474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None