barSeed - Barley Seed Development Database

Probe CUST_26259_PI390587928

Source Contig U35_44946

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26259_PI390587928	Hv_44K_v2	TAGGTTTGCACGCAGTGCGCGCCAATTCTCCCAGAGTAATCCACTACTACTACTAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69748.1	2752	9e-22	1400 - 1454	100	55 / 55	plus	ABC14331 ABC43234
JLOC1	JLOC1_46238.1	1506	5e-22	1224 - 1278	100	55 / 55	plus
Harvest21	ABC43234	542	3e-25	12 - 71	100	60 / 60	minus	ABC43234
Harvest35	U35_44946	542	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (542 bp)

>U35_44946 542 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGTAGTAGTAGTGGATTACTCTGGGAGAATTGGCGCGCACTGC
GTGCAAACCTAGGGCTGTGTTCAAATGGCGTGACGACCAAGCCGAGGCATCGCCATTGCC
AGAATTAACATGCACGCTCGACTTACTTAGGCCTACTTACTTAATTCTCTACGTCGAGCT
AGCTAATGGAACACGGACAGCGGCATCATGCACCCGGCAGCGTGCGCCTCGGCGGCGGCG
GCGGCTGCCGCCATCACCATCACGATGTCATCCCCGGGGGCGGGGACTACGCCGTCCAGG
GCACCCACGGGGTCGCCGTCCGGCGCCGGCGCCAAAAAGTGTCCCTGGAAAAGGTGCGCG
TGCATGGGGAACAGGTAGTGCGTCTGCTCCAGCATGTCATGCCGCATGTCGGGCCTGTCC
ACGGGCGCCGGGTTCGCCGCGGCGGCGGCGGCCGCCGCCTGCTGCTTCTGCTTCGACGAC
GTCTGGGGGTGCCTCTTCCGGCGCTTCTTCTTGTAAGCGATGCCGCGCGCCTTGGCCTGG
CC

Homology of Contig U35_44946 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None