- Probe CUST_26243_PI390587928
- Source Contig U35_32975
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26243_PI390587928 | Hv_44K_v2 | TGTAGACTGTTGACGGTGTTTGTCTATGCTGCGATAGCCAATGCCATTTTCTTGTAGTGG | 30 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.578 | 1.540 | 1.031 | 0.793 | 0.293 | 0.418 |
| Raw | 1550.880 | 2320.459 | 1394.423 | 1682.558 | 220.773 | 338.693 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68656.3 | 2053 | 7e-23 | 1955 - 2014 | 98 | 59 / 60 | plus | ABC24303 |
| MLOC | MLOC_68656.1 | 1793 | 7e-23 | 72 - 131 | 98 | 59 / 60 | minus | ABC24303 |
| MLOC | MLOC_68656.4 | 2366 | 7e-23 | 23 - 82 | 98 | 59 / 60 | minus | ABC13289 ABC24303 |
| MLOC | MLOC_68656.5 | 2747 | 7e-23 | 23 - 82 | 98 | 59 / 60 | minus | ABC13289 ABC24303 |
| MLOC | MLOC_68656.2 | 2752 | 7e-23 | 72 - 131 | 98 | 59 / 60 | minus | ABC13289 ABC24303 |
| MLOC | MLOC_68656.7 | 2470 | 3e-22 | 3 - 58 | 100 | 56 / 56 | minus | ABC13289 ABC24303 |
| MLOC | MLOC_68656.6 | 1783 | 3e-22 | 3 - 58 | 100 | 56 / 56 | minus | ABC24303 |
| JLOC1 | JLOC1_45438.6 | 2536 | 4e-23 | 2288 - 2347 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45438.5 | 2525 | 4e-23 | 2277 - 2336 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45438.4 | 2265 | 4e-23 | 2017 - 2076 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45438.3 | 2666 | 4e-23 | 2418 - 2477 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45438.2 | 2575 | 4e-23 | 2327 - 2386 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45438.1 | 2653 | 4e-23 | 2405 - 2464 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_32975 | 320 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus |
Contig Sequence (320 bp)
>U35_32975 320 Hv_44K_v2 CCCTCCAGAGCATGCTCGAGCGGCCGCTGCCCACTACAAGAAAATGGCATTGGCTATCGC AGCATAGACAAACACCGTCAACAGTCTACAAGCCGTGATGTTATCTAGACAAAACTCCGG AGGACAATGAGAGTTGCAAACCGGCCTAGAATACGTACAAGTACCATCATTTGTCGAAAA TACAAATATGCTTTCTCCAGAAGTCAGGCCCCATGTCTACGTGGCTCACTGCCACATCCC ACCCATCTCTTGCGACATCTCCGCTCACTTTCACCTCGGCAAATGTTCCCACCTTTTGAC GGTAAGTACACGAACCCTTT
Homology of Contig U35_32975 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |