barSeed - Barley Seed Development Database

Probe CUST_26232_PI390587928

Source Contig U35_27137

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26232_PI390587928	Hv_44K_v2	CTGTATGAACACCGCAAAGACTGTAGTTTCGTATGTTTTAGTGGAAATTTTTGGTATCAT	20	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.434	1.371	1.117	0.868	0.352	0.391
Raw	266.685	389.115	282.856	347.164	48.943	59.737

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373529	755	2e-24	645 - 704	100	60 / 60	plus	None
MLOC	MLOC_78605.2	2814	2e-24	23 - 82	100	60 / 60	minus	ABC40111
MLOC	MLOC_78605.3	1268	2e-24	7 - 66	100	60 / 60	minus	None
MLOC	MLOC_78605.1	1836	2e-24	180 - 239	100	60 / 60	minus	None
MLOC	MLOC_78604.1	2494	2e-24	180 - 239	100	60 / 60	minus	ABC40111
JLOC1	JLOC1_52387.5	1247	8e-25	1057 - 1116	100	60 / 60	plus
JLOC1	JLOC1_52387.4	1266	8e-25	1076 - 1135	100	60 / 60	plus
JLOC1	JLOC1_52387.3	2446	8e-25	2256 - 2315	100	60 / 60	plus
JLOC1	JLOC1_52387.2	1788	8e-25	1598 - 1657	100	60 / 60	plus
JLOC1	JLOC1_52387.1	588	8e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_27137	800	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (800 bp)

>U35_27137 800 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAATGATACCAAAAATTTCCACTAAAACATACGAAACTACAG
TCTTTGCGGTGTTCATACAGTCTGATACGCCAACTACTGTACAACATAACTAGCACTACA
TTATAACTAGCTACTCTCAGCTTTGTCCGGTTTCAGGATTCAGGCTTCTTCAAATTTCTT
CATCCTGGAGCTCCTATAAAAGAGAGGTAATGCAACACTTTGAGCTTGATGAAGGCCTGA
AAGTCATGCTGCAACAACCACATAGAAACATAATTATAAGCACAAATACAACAATCATCA
CAGTTCAAGCAAATGATCTGGGAGGAGAGCGTGAAAAAGGAAGCAACACATGGCAGGAAT
GTTTATAACGTCTGATTCGATAACTTCAAATAGGAATAACGTATACAAGTATAATACAAA
AATATGAGAAACTATCACAGTACGAAAATGATATCACAGAATTATATACAAACTCAATGA
AAGATTGCAATGTTTTACTCAACGTATGAAACTCAAATAACTTTTCTACTTAGTCACGAG
CATCATGCATTTCAACTTAAATAACTGCAGAAATTAAATAGCATAAAGACTATATTCTAG
AGATCAAAATAGATGAAGCTGGCAATAGAGAAGATTCTGGACATGTAAGTAGTCTCTGGT
TCATGTAAAGCTGAAGACAACGTTCGATGAGATTCTAGACCTGTAAAGTAGTTTCTGCAT
GAGAACTCATTGCTTCAAAGAAAATGCATGCACAAAAGAACTAACAAAGAATCTCATGTA
TATGCAAAGAAAATCCAGTC

Homology of Contig U35_27137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None