barSeed - Barley Seed Development Database

Probe CUST_26230_PI390587928

Source Contig U35_27139

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26230_PI390587928	Hv_44K_v2	ATTTGAAGACTAGTTACAAGCTGGATGATATTCCCTGCAGCAACTTTGAACATTCAGTTG	528	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360496	2831	7e-23	105 - 161	100	57 / 57	plus	ABC18976 ABC26649
MLOC	MLOC_13300.1	1143	3e-21	665 - 724	97	58 / 60	plus	None
JLOC1	JLOC1_8985.1	1157	2e-21	720 - 779	97	58 / 60	plus
Harvest21	ABC25124	588	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_27139	588	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_27139 588 Hv_44K_v2
GCAGGAATTCGGACGAGGTCTCATACGCGTCCAAAAAATCCATATCTCATCATCTGCACT
TCTTTTCACTCTGAGCACACCAAGCACAAACTAGAGGAATCGATTGAGAGCTAGAGGCCT
AGAGCTCAATGGAGGGGGTAAGTGCTTCGCACGGTGTGTTGGGTCCCCTGTTGGTGAAGC
TCACCGGTTTGCTTGCCGGTGAGTGTTCCCGGCTGAAAGGCGTCCGCCGAGAGATCCGCT
CGCTCAAAGCTGAGCTGACAGGCATGCATGCCGCGGTCCACAAGTACACAATGCTGGAAG
ATCCCGATGTCCAGATGAAGGCGTGGATATCTCTGCTGAGGGAGCTGACCTATGATATCG
AAGATGTCATCGACAAGTTCATCCACCAGCTCGGTAATGGCGGCCAGCACGAGGGTGGCT
TCAAGGAGTTCTTCCGCAAGACCGCTCGCCGTCTCAAGACTCTGGGGTCTCGTCGCGGTA
TCGCGAACAAAATCGATGATCTGAAGATTCGTCTCAAGCAGGTAAAAGATTTGAAGACTA
GTTACAAGCTGGATGATATTCCCTGCAGCAACTTTGAACATTCAGTTG

Homology of Contig U35_27139 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g37166.1	958	4e-55
Arabidopsis v10	None