barSeed - Barley Seed Development Database

Probe CUST_26164_PI390587928

Source Contig U35_27158

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26164_PI390587928	Hv_44K_v2	AATCTTCAAGACGAACACCAACTCCATCGGCGCTTTCGCCAGCCAGACAACGGTCAACGG	206	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68042.1	1949	2e-24	213 - 272	100	60 / 60	plus	ABC06007 ABC15484
JLOC1	JLOC1_44979.1	1356	8e-25	217 - 276	100	60 / 60	plus
Harvest21	ABC23934	618	3e-25	207 - 266	100	60 / 60	plus
Harvest35	U35_27158	618	3e-25	207 - 266	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_27158 618 Hv_44K_v2
TCAATCAAAATGGCTTCTTCAATGCCTTGCCTAGTCCTACTCTTGGGCATCGCCTGCCTG
CTGCAGGCATCGCTGACCGCGGCAGACCCGCCGCAGCGGCCATCATGGGAGCTGCCGGAA
TCCGAGGTGAGGTCCAGGTGGACGAGGTGGCAAACCAAGTACTCGAAGCGCTACCCGAGC
CACGAGGAGCAGGAGAAGCGGTTCGGAATCTTCAAGACGAACACCAACTCCATCGGCGCT
TTCGCCAGCCAGACAACGGTCAACGGCGGCGTCGGCTCGTTCGGCCCCCAGACCGTCACG
ACGGTCAGGGTCGGCATGAACAGATTCGGCGATCTCAACCCCAGCGAGGTCGCCGAGCAG
TTCACCGGGTTCAACAACTCCGTCTTCACCCCAGAGCCTCCAACCCCGCTCCCCTACGAC
TCATGGAAACCGTGCTGCGTTGACTGGCGCTCGAGCGGCGCCGTCACCGGCGTCAAGTTT
CAGGGTTCTTGCTTGTCATGCTGGGCATTCGCGGCCGTGGCGGCCATCGAGGGCATGAAC
AAGATCAGGACCGGCGAACTGGTGTCTCTGTCGGAGCAGCAGCTTGTGGACTGCGACACC
GGTAGCAGTGGCTGCAGC

Homology of Contig U35_27158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g24600.1	362	3e-78	protein\|fruit bromelain precursor, putative, expressed
Brachypodium v1_2	Bradi2g07010.1	365	4e-97
Arabidopsis v10	None