- Probe CUST_26157_PI390587928
- Source Contig U35_15181
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26157_PI390587928 | Hv_44K_v2 | GGCAATTCTTCTTATACTACCGTGTAAATCAATCAATATGAACCGATGAATGAACTGGAG | 510 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 20.570 | 8.308 | 1.396 | 0.759 | 0.901 | 0.802 |
| Raw | 154.198 | 100.506 | 14.120 | 11.574 | 2.986 | 3.021 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64948.1 | 2031 | 2e-24 | 1834 - 1893 | 100 | 60 / 60 | plus | ABC06409 ABC15518 ABC18569 |
| MLOC | MLOC_64948.3 | 1557 | 2e-24 | 1456 - 1515 | 100 | 60 / 60 | plus | ABC06409 ABC15518 ABC18569 |
| MLOC | MLOC_64948.2 | 1457 | 2e-24 | 1397 - 1456 | 100 | 60 / 60 | plus | ABC06409 ABC15518 ABC18569 |
| JLOC1 | JLOC1_42691.1 | 2609 | 8e-25 | 2201 - 2260 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18569 | 626 | 3e-25 | 33 - 92 | 100 | 60 / 60 | minus | ABC18569 |
| Harvest35 | U35_15181 | 598 | 3e-25 | 511 - 570 | 100 | 60 / 60 | plus |
Contig Sequence (598 bp)
>U35_15181 598 Hv_44K_v2 TCCCGGACTTCACCCTCGCGCTCGACCACTTATGCATCCACGCCGGCGGCCGCGGCGTGC TGGACGAGCTGGAGCGCAGCCTCAAGCTCAGCGCCTGGCACATGGAGCCGTCCCGGATGA CGCTCTACCGCTTCGGCAACACCTCCAGCAGCTCGCTTTGGTACGAGCTAGCCTACTGCG AGGCCAAGGGCAGGATCAAGAAGGGGGACAGGGTGTGGCAGATCGCATTCGGCTCAGGCT TCAAGTGCAACAGCGCCGTCTGGAAGGCGCTCAGGCCGGTCGACGCCGTAGCCGTCGGGG ACAGCGGCAGCCCCTGGGCGCAGGACGTCGACGTGCTGCCGGTGCACGTGCCCAAGGTGG TACCCATCGACGACGACGAGGCGTCCTACAAGACGGCCGCCTAGTTTCTTTCTCATCCTC CAAGAATCGAAGCGTAAGTGCGTGCACCTGTGATCATCTCTAGCTCGTGTCGATCGCTGC AGGCCGGGCTTACTATATATACTGATGAAGGGCAATTCTTCTTATACTACCGTGTAAATC AATCAATATGAACCGATGAATGAACTGGAGAATTATTATTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_15181 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g06705.1 | 308 | 8e-63 | protein|3-ketoacyl-CoA synthase, putative, expressed |
| Brachypodium v1_2 | Bradi1g74257.1 | 529 | 2e-64 | |
| Arabidopsis v10 | AT2G26640.1 | 509 | 6e-51 | | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11330094-11331623 FORWARD LENGTH=509 |